CX671478

Overview
NameCX671478
Unique NameCX671478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.471e-19
Identity = 62/184 (33.70%), Postives = 99/184 (53.80%), Query Frame = -2
Query:  214 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 735
            +FV N+  D+D EKL  LF + G  E  +VI +  + +S+GFGFV   T E A+KAV   H   IDG++L V +A  +  +     R FE          PG  IY+ NL   +++ +L++ FS  G +  A+V+   E G+ +GFG V  SS  E   A+  ++G+ +  + + V + + R+R
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARRR 381          

HSP 2 Score: 70.0922 bits (170), Expect = 2.039e-11
Identity = 43/176 (24.43%), Postives = 90/176 (51.14%), Query Frame = -2
Query:  211 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA-PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 735
            +F+ NL   +D+  L  LF   G +   +V+   + + S+G+ +V   ++  A +A+   +   ++ R + V +   P     E   R       ++V N+  ++D+ +L+++F E+G   + +V+ D  +G+S+GFGFV   +      A+  L G+++DG+ + V  A+ +  R
Sbjct:  108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.471e-19
Identity = 62/184 (33.70%), Postives = 99/184 (53.80%), Query Frame = -2
Query:  214 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 735
            +FV N+  D+D EKL  LF + G  E  +VI +  + +S+GFGFV   T E A+KAV   H   IDG++L V +A  +  +     R FE          PG  IY+ NL   +++ +L++ FS  G +  A+V+   E G+ +GFG V  SS  E   A+  ++G+ +  + + V + + R+R
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARRR 381          

HSP 2 Score: 70.0922 bits (170), Expect = 2.039e-11
Identity = 43/176 (24.43%), Postives = 90/176 (51.14%), Query Frame = -2
Query:  211 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA-PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 735
            +F+ NL   +D+  L  LF   G +   +V+   + + S+G+ +V   ++  A +A+   +   ++ R + V +   P     E   R       ++V N+  ++D+ +L+++F E+G   + +V+ D  +G+S+GFGFV   +      A+  L G+++DG+ + V  A+ +  R
Sbjct:  108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.920e-19
Identity = 60/196 (30.61%), Postives = 105/196 (53.57%), Query Frame = -2
Query:  178 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PNMTCHR 735
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R FE           G  +YV NL   +D+ RL + FS  G + +A+V+   E GRS+GFGFV  SS  E   A+  ++G+ +  + + V +A+ ++ R +   N    R
Sbjct:  193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385          

HSP 2 Score: 82.4185 bits (202), Expect = 3.971e-15
Identity = 47/177 (26.55%), Postives = 95/177 (53.67%), Query Frame = -2
Query:  205 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 735
            +F+ NL   +D++ L   F   G +   +V+ +   + S+G+GFV   T E AE+A+E  +   ++ R + V +   R  +        +    +Y+ N   ++D+ RL+++F + G  ++ +V+ D E+G+S+GFGFV+     +   A+  ++G+ L+G+ I V  A+ +  R +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.920e-19
Identity = 60/196 (30.61%), Postives = 105/196 (53.57%), Query Frame = -2
Query:  178 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PNMTCHR 735
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R FE           G  +YV NL   +D+ RL + FS  G + +A+V+   E GRS+GFGFV  SS  E   A+  ++G+ +  + + V +A+ ++ R +   N    R
Sbjct:  193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385          

HSP 2 Score: 80.8777 bits (198), Expect = 1.155e-14
Identity = 46/177 (25.99%), Postives = 95/177 (53.67%), Query Frame = -2
Query:  205 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 735
            +F+ NL   +D++ L   F   G +   +V+ +   + S+G+GFV   T E AE+A+E  +   ++ R + V +   +  +        +    +Y+ N   ++D+ RL+++F + G  ++ +V+ D E+G+S+GFGFV+     +   A+  ++G+ L+G+ I V  A+ +  R +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.920e-19
Identity = 59/196 (30.10%), Postives = 102/196 (52.04%), Query Frame = -2
Query:  178 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PNMTCHR 735
            +++ N   D+D ++L  +F   G     +V+ + ++ RSRGFGFV     EEA+KAV   +  +++GR++ V +A  R  +     R FE           G  +YV NL   +D+ RL + F  +G + +A+V+   E G S+GFGFV  SS  E   A+  ++G+ +  + + V +A+ ++ R +   N    R
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385          

HSP 2 Score: 69.3218 bits (168), Expect = 3.479e-11
Identity = 49/178 (27.53%), Postives = 84/178 (47.19%), Query Frame = -2
Query:  211 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 741
            A L++G+L  DV    L   F  AG +    V  +  T RS  + ++      +AE+A++  +   I GR + +  +       +R P + + G   +++ NL   +DN  L   FS  G +++ +VV D     SRG+GFV   +    N AI  ++G  L+ R + V   + R+ R
Sbjct:   11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRER 179          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.732e-19
Identity = 60/196 (30.61%), Postives = 105/196 (53.57%), Query Frame = -2
Query:  178 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PNMTCHR 735
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R FE           G  +YV NL   +D+ RL + FS  G + +A+V+   E GRS+GFGFV  SS  E   A+  ++G+ +  + + V +A+ ++ R +   N    R
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385          

HSP 2 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 47/177 (26.55%), Postives = 94/177 (53.11%), Query Frame = -2
Query:  205 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 735
            +F+ NL   +D++ L   F   G +   +V+ +   + S+G+GFV   T E AE+A+E  +   ++ R + V +   R  +        +    +Y+ N   ++D+ RL+ +F + G  ++ +V+ D E+G+S+GFGFV+     +   A+  ++G+ L+G+ I V  A+ +  R +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.732e-19
Identity = 60/196 (30.61%), Postives = 105/196 (53.57%), Query Frame = -2
Query:  178 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PNMTCHR 735
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R FE           G  +YV NL   +D+ RL + FS  G + +A+V+   E GRS+GFGFV  SS  E   A+  ++G+ +  + + V +A+ ++ R +   N    R
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385          

HSP 2 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 47/177 (26.55%), Postives = 94/177 (53.11%), Query Frame = -2
Query:  205 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 735
            +F+ NL   +D++ L   F   G +   +V+ +   + S+G+GFV   T E AE+A+E  +   ++ R + V +   R  +        +    +Y+ N   ++D+ RL+ +F + G  ++ +V+ D E+G+S+GFGFV+     +   A+  ++G+ L+G+ I V  A+ +  R +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.732e-19
Identity = 60/196 (30.61%), Postives = 105/196 (53.57%), Query Frame = -2
Query:  178 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PNMTCHR 735
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R FE           G  +YV NL   +D+ RL + FS  G + +A+V+   E GRS+GFGFV  SS  E   A+  ++G+ +  + + V +A+ ++ R +   N    R
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385          

HSP 2 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 47/177 (26.55%), Postives = 94/177 (53.11%), Query Frame = -2
Query:  205 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 735
            +F+ NL   +D++ L   F   G +   +V+ +   + S+G+GFV   T E AE+A+E  +   ++ R + V +   R  +        +    +Y+ N   ++D+ RL+ +F + G  ++ +V+ D E+G+S+GFGFV+     +   A+  ++G+ L+G+ I V  A+ +  R +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.319e-18
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = -2
Query:  220 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 459
            +R +VG L W  D+  LE  FS++G+V++++++ DRETGRSRGFGFVT   E  + DAI  ++GQ+LDGR+I VN A+ R
Sbjct:    8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.722e-18
Identity = 58/191 (30.37%), Postives = 104/191 (54.45%), Query Frame = -2
Query:  193 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PN 735
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R FE              +YV NL   +D+ RL + FS  G + +A+V+   E GRS+GFGFV  SS  E   A+  ++G+ +  + + V +A+ ++ R ++  N
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTN 380          
The following BLAST results are available for this feature:
BLAST of CX671478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
PABP5_HUMAN3.471e-1933.70Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO3.471e-1933.70Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PABP1_RAT5.920e-1930.61Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE5.920e-1930.61Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
EPABA_XENLA5.920e-1930.10Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP1_PONAB7.732e-1930.61Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN7.732e-1930.61Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN7.732e-1930.61Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
GRP1_SINAL1.319e-1851.25Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
PABP3_HUMAN1.722e-1830.37Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C11-F21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671478 ID=CX671478; Name=CX671478; organism=Citrus sinensis; type=EST; length=925bp
CAAAAGTGATGTGATTTCAGCTTTCAACTCCATAAGCAAATTTTCCATTA
AACTATCTGGCAGAAACTCAACAAATCTCATTCAAAAAAAAAAAAAAAAG
GGAAAAAAAAAGATAGTGAACCAGGACAGAGAAAGAGGGAAGAAAATAAA
TAGAGACCACCACTAGCAGACCTTGAATCTATGACATGTCATGTTCGGTC
AAAAGGAACTGCGTCTTTGTCTATCCTCTGCAACATTTACTCTGATTGCT
CTCCCATCCAGATTCTGTCCGTCAAGAGCAGCAATTGCGTCATTCAATTC
AGTCTCACTAGACATTGTAACAAAGCCAAAACCTCGTGAACGTCCAGTCT
CCCTGTCATAAACAACCCGGGCATTCACCACCTTACCATGCTCACTAAAA
ACTTGCTCTAGACGAGCATTATCCACTTCCCATGGCAGGTTGCCCACATA
GATTCTAAAACCAGGCTCAAACACACGAGGGGCGCGTTCAGGCTGTGTTC
CTCTTGGAGCAGCTTTATTTACCGTCAAAAGCCTTCCATCTATGTCATAT
CTGTGAAACATTTCCACAGCCTTTTCAGCTTCCTCAACAGTACTCATTGT
CACGAACCCAAAGCCACGACTCCGGTCAGTCTCCCTGTTGTAAATAACCT
CGGCAATCTCGACAGTTCCAGCCTTCTCAAAAAGCATAGCAAGCTTTTCA
CTATCAACATCATAGGGCAAGTTCCCAACAAACAACTTAGCATCCTCAGG
TGGTTCCACAAATTCCTCTTCCTCAAAAACGCCCTCTTCACCACTCTCCT
CCTGCCTTTCACCAGCCTCAACAACTGTGTCTTCGCCTTCGGGTTCCCCC
CCATCAGATAAATTCCCTTCAGTTTCATCGGCTCCTTGATTTTCCCAATT
CGGTTCTTCTTCCCCATTCTCTTCT
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