CX671478
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 1.116e-17 Identity = 49/168 (29.17%), Postives = 86/168 (51.19%), Query Frame = -2 Query: 232 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 735 L V LP ++ ++ LF G +E +++ ++ T +S G+GFV S +A+KA+ + + + + V+ A P A +YV LP + +EQ+FS++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G A + V Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3) HSP 1 Score: 90.5077 bits (223), Expect = 1.458e-17 Identity = 56/178 (31.46%), Postives = 90/178 (50.56%), Query Frame = -2 Query: 205 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 738 KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P +I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D I ++G V A +Q +S Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALCKQEMAS 188
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3) HSP 1 Score: 90.5077 bits (223), Expect = 1.458e-17 Identity = 55/178 (30.90%), Postives = 90/178 (50.56%), Query Frame = -2 Query: 205 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 738 KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVE+ + A+ + +DGR++ +A R + + P +I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D I ++G V A +Q +S Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.458e-17 Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = -2 Query: 220 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 459 +R +VG L W N LE F+ +G++++++V+ DRETGRSRGFGFVT SSE + DAI ++G+ LDGR I VN A+ R Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.458e-17 Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -2 Query: 220 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 468 E +R +VG L W ++ LEQ FS+ G + +++++ DRETGRSRGFGFVT E + DAI ++GQ LDGR I VN A+ R Sbjct: 3 EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.904e-17 Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 232 LPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 720 LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A +YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G + V Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 2.487e-17 Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = -2 Query: 205 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 738 KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P +I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D I + G V A +Q +S Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT-TPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVKGHNCEVRKALPKQEMAS 188
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.248e-17 Identity = 58/177 (32.77%), Postives = 88/177 (49.72%), Query Frame = -2 Query: 217 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVT---MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 738 KLF+G L Y E L FEK G + V+ + T RSRGFGF+T S ++EA+K+ + IDGR++ +A PR Q +P +++VG L + D + F G +V+ +V D+ETG+ RGF FV + D + L+G+ + V A +Q Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS----RPHKIDGRVVEPKRAVPR--QDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPV-DKVVLQKQHQLNGKMVDVKKALPKQ 201
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 89.3521 bits (220), Expect = 3.248e-17 Identity = 57/196 (29.08%), Postives = 103/196 (52.55%), Query Frame = -2 Query: 178 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PNMTCHR 735 +++ N D++ E+L +F K G +V+ + + +S+GFGFV+ E+A+KAV+ + D++G+ + V +A + + R FE G +YV NL +D+ RL + F G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+ ++ R + N R Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385 HSP 2 Score: 77.411 bits (189), Expect = 1.277e-13 Identity = 42/177 (23.73%), Postives = 97/177 (54.80%), Query Frame = -2 Query: 205 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 735 +F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A++ + ++ R + V + R + + +Y+ N ++++ RL+++F ++G ++ +V+ D + G+S+GFGFV+ + A+ ++G++++G+++ V A+ + R + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.248e-17 Identity = 55/185 (29.73%), Postives = 99/185 (53.51%), Query Frame = -2 Query: 211 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 735 ++V NLP ++ ++L F K G + A V+ ++ SR FGFV E A AVE + + +L V +A + + E R FE G +Y+ NL VD+ +L+++FSE+G V +++V+ + + G SRGFGFV S+ E A++ ++G+ + + + + +A+ ++ R Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSA-VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413 The following BLAST results are available for this feature:
BLAST of CX671478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 235
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671478 ID=CX671478; Name=CX671478; organism=Citrus sinensis; type=EST; length=925bpback to top |