CX671478

Overview
NameCX671478
Unique NameCX671478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12720 contig Csv1_Contig12720:424..1349. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.116e-17
Identity = 49/168 (29.17%), Postives = 86/168 (51.19%), Query Frame = -2
Query:  232 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 735
            L V  LP ++  ++   LF   G +E  +++ ++ T +S G+GFV  S   +A+KA+   +   +  + + V+ A P       A         +YV  LP  +    +EQ+FS++G+++ +R++ D+ TG SRG GF+      E  +AI  L+GQ   G A  + V
Sbjct:   41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.458e-17
Identity = 56/178 (31.46%), Postives = 90/178 (50.56%), Query Frame = -2
Query:  205 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 738
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVEE + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    ++ DR +G+ RGF FVT      + D I       ++G    V  A  +Q  +S
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALCKQEMAS 188          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.458e-17
Identity = 55/178 (30.90%), Postives = 90/178 (50.56%), Query Frame = -2
Query:  205 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 738
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVE+ + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    ++ DR +G+ RGF FVT      + D I       ++G    V  A  +Q  +S
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.458e-17
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = -2
Query:  220 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 459
            +R +VG L W   N  LE  F+ +G++++++V+ DRETGRSRGFGFVT SSE  + DAI  ++G+ LDGR I VN A+ R
Sbjct:    8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.458e-17
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -2
Query:  220 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 468
            E  +R +VG L W  ++  LEQ FS+ G + +++++ DRETGRSRGFGFVT   E  + DAI  ++GQ LDGR I VN A+ R
Sbjct:    3 EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.904e-17
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  232 LPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 720
            LP ++  E+L  LF   G +E  +++ ++ T +S G+GFV     ++AEKA+   +   +  + + V+ A P       A         +YV  LP  +    LEQ+FS++G+++ +R++ D+ TG SRG GF+      E  +AI  L+GQ   G    + V
Sbjct:   46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.487e-17
Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = -2
Query:  205 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 738
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVEE + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    ++ DR +G+ RGF FVT      + D I       + G    V  A  +Q  +S
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT-TPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVKGHNCEVRKALPKQEMAS 188          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.248e-17
Identity = 58/177 (32.77%), Postives = 88/177 (49.72%), Query Frame = -2
Query:  217 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVT---MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 738
            KLF+G L Y    E L   FEK G +    V+ +  T RSRGFGF+T    S ++EA+K+      + IDGR++   +A PR  Q   +P       +++VG L  + D   +   F   G +V+  +V D+ETG+ RGF FV       + D +       L+G+ + V  A  +Q
Sbjct:   32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS----RPHKIDGRVVEPKRAVPR--QDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPV-DKVVLQKQHQLNGKMVDVKKALPKQ 201          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.248e-17
Identity = 57/196 (29.08%), Postives = 103/196 (52.55%), Query Frame = -2
Query:  178 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PNMTCHR 735
            +++ N   D++ E+L  +F K G     +V+ + +  +S+GFGFV+    E+A+KAV+  +  D++G+ + V +A  +  +     R FE           G  +YV NL   +D+ RL + F   G + +A+V+   E GRS+GFGFV  SS  E   A+  ++G+ +  + + V +A+ ++ R +   N    R
Sbjct:  193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385          

HSP 2 Score: 77.411 bits (189), Expect = 1.277e-13
Identity = 42/177 (23.73%), Postives = 97/177 (54.80%), Query Frame = -2
Query:  205 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 735
            +F+ NL   +D++ L   F   G +   +V+ +   + S+G+GFV   T E AE+A++  +   ++ R + V +   R  +        +    +Y+ N   ++++ RL+++F ++G  ++ +V+ D + G+S+GFGFV+     +   A+  ++G++++G+++ V  A+ +  R +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.248e-17
Identity = 55/185 (29.73%), Postives = 99/185 (53.51%), Query Frame = -2
Query:  211 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 735
            ++V NLP ++  ++L   F K G +  A V+   ++  SR FGFV     E A  AVE  +   +   +L V +A  +  + E   R FE           G  +Y+ NL   VD+ +L+++FSE+G V +++V+ + + G SRGFGFV  S+  E   A++ ++G+ +  + + + +A+ ++ R
Sbjct:  231 VYVKNLPKEIGEDELRKTFGKFGVISSA-VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413          
The following BLAST results are available for this feature:
BLAST of CX671478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
ELAV3_HUMAN1.116e-1729.17ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ROA1_RAT1.458e-1731.46Heterogeneous nuclear ribonucleoprotein A1 OS=Ratt... [more]
ROA1_MACMU1.458e-1730.90Heterogeneous nuclear ribonucleoprotein A1 OS=Maca... [more]
GRPA_MAIZE1.458e-1751.25Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP1_DAUCA1.458e-1749.40Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
ELAV2_RAT1.904e-1730.06ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
RA1L2_HUMAN2.487e-1731.46Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]
ROA1_DROME3.248e-1732.77Heterogeneous nuclear ribonucleoprotein A1 OS=Dros... [more]
PABPA_XENLA3.248e-1729.08Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP3_ARATH3.248e-1729.73Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C11-F21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671478 ID=CX671478; Name=CX671478; organism=Citrus sinensis; type=EST; length=925bp
CAAAAGTGATGTGATTTCAGCTTTCAACTCCATAAGCAAATTTTCCATTA
AACTATCTGGCAGAAACTCAACAAATCTCATTCAAAAAAAAAAAAAAAAG
GGAAAAAAAAAGATAGTGAACCAGGACAGAGAAAGAGGGAAGAAAATAAA
TAGAGACCACCACTAGCAGACCTTGAATCTATGACATGTCATGTTCGGTC
AAAAGGAACTGCGTCTTTGTCTATCCTCTGCAACATTTACTCTGATTGCT
CTCCCATCCAGATTCTGTCCGTCAAGAGCAGCAATTGCGTCATTCAATTC
AGTCTCACTAGACATTGTAACAAAGCCAAAACCTCGTGAACGTCCAGTCT
CCCTGTCATAAACAACCCGGGCATTCACCACCTTACCATGCTCACTAAAA
ACTTGCTCTAGACGAGCATTATCCACTTCCCATGGCAGGTTGCCCACATA
GATTCTAAAACCAGGCTCAAACACACGAGGGGCGCGTTCAGGCTGTGTTC
CTCTTGGAGCAGCTTTATTTACCGTCAAAAGCCTTCCATCTATGTCATAT
CTGTGAAACATTTCCACAGCCTTTTCAGCTTCCTCAACAGTACTCATTGT
CACGAACCCAAAGCCACGACTCCGGTCAGTCTCCCTGTTGTAAATAACCT
CGGCAATCTCGACAGTTCCAGCCTTCTCAAAAAGCATAGCAAGCTTTTCA
CTATCAACATCATAGGGCAAGTTCCCAACAAACAACTTAGCATCCTCAGG
TGGTTCCACAAATTCCTCTTCCTCAAAAACGCCCTCTTCACCACTCTCCT
CCTGCCTTTCACCAGCCTCAACAACTGTGTCTTCGCCTTCGGGTTCCCCC
CCATCAGATAAATTCCCTTCAGTTTCATCGGCTCCTTGATTTTCCCAATT
CGGTTCTTCTTCCCCATTCTCTTCT
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