CX671478

Overview
NameCX671478
Unique NameCX671478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12720 contig Csv1_Contig12720:424..1349. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.237e-17
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = -2
Query:  217 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 738
            KLF+G L ++   E L   +E+ G +    V+ +  + RSRGFGFVT S++ E + A+     + IDGR++   +A  R  +    P       +++VG +  + +   L   F E+GK+    ++ DR++G+ RGFGFVT      + D I       ++G    V  A  RQ
Sbjct:   10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 179          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.451e-17
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = -2
Query:  217 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 738
            KLF+G L +    E L   +E+ G +    V+ +  + RSRGFGFVT S++ E + A+     + IDGR++   +A  R  +    P       +++VG +  + +   L   F+E+GK+    ++ DR++G+ RGFGFVT      + D I       ++G    V  A  RQ
Sbjct:   10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 179          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.451e-17
Identity = 48/168 (28.57%), Postives = 85/168 (50.60%), Query Frame = -2
Query:  232 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 735
            L V  LP ++  ++L  LF   G VE A++I ++    S G+GFV   T ++AE+A+   +   +  + + V+ A P     + A         +Y+  LP  +    +E +FS  G+++N+RV+ D+ TG SRG  F+     +E  +AI + +G    G +  + V
Sbjct:   22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.451e-17
Identity = 58/187 (31.02%), Postives = 86/187 (45.99%), Query Frame = -2
Query:  208 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA---------PRVFEP-GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 738
            KLFVG L +    E L   F + G V    ++ ++ T++SRGFGFV           V     + +DGR +      PRG QPER          PR       +I+VG +P       L + F + G V    ++YD E  R RGFGF+T   E  ++ A+  +   ++ G+ + V  AE R  +S
Sbjct:   11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKS 195          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.234e-16
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = -2
Query:  217 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 738
            KLF+G L ++   E L   +E+ G +    V+ +  + RSRGFGFVT S++ E + A+     + IDGR++   +A  R  +    P       +++VG +  + +   L   F E+GK+    ++ DR++G+ RGFGFVT      + D I       ++G    V  A  RQ
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIFLQKYHTINGHNAEVRKALSRQ 191          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.234e-16
Identity = 50/172 (29.07%), Postives = 93/172 (54.07%), Query Frame = -2
Query:  220 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 735
            L + NL Y    E L  +FEKA  +++ +     +  +S+G+ F+  ++ E+A++A+   ++ +I+GR + +    PRG+   R+    +P   ++V  L  +     L++ F      V AR+V DRETG S+GFGFV  +SE +   A  A++   +DG  + ++ A+ +
Sbjct:  490 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 650          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.234e-16
Identity = 50/172 (29.07%), Postives = 93/172 (54.07%), Query Frame = -2
Query:  220 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 735
            L + NL Y    E L  +FEKA  +++ +     +  +S+G+ F+  ++ E+A++A+   ++ +I+GR + +    PRG+   R+    +P   ++V  L  +     L++ F      V AR+V DRETG S+GFGFV  +SE +   A  A++   +DG  + ++ A+ +
Sbjct:  488 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.234e-16
Identity = 50/172 (29.07%), Postives = 93/172 (54.07%), Query Frame = -2
Query:  220 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 735
            L + NL Y    E L  +FEKA  +++ +     +  +S+G+ F+  ++ E+A++A+   ++ +I+GR + +    PRG+   R+    +P   ++V  L  +     L++ F      V AR+V DRETG S+GFGFV  +SE +   A  A++   +DG  + ++ A+ +
Sbjct:  489 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 649          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.234e-16
Identity = 50/172 (29.07%), Postives = 93/172 (54.07%), Query Frame = -2
Query:  220 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 735
            L + NL Y    E L  +FEKA  +++ +     +  +S+G+ F+  ++ E+A++A+   ++ +I+GR + +    PRG+   R+    +P   ++V  L  +     L++ F      V AR+V DRETG S+GFGFV  +SE +   A  A++   +DG  + ++ A+ +
Sbjct:  488 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648          
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.234e-16
Identity = 49/168 (29.17%), Postives = 84/168 (50.00%), Query Frame = -2
Query:  232 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 735
            L V  LP ++  E+L  LF   G VE A++I ++    S G+GFV   T ++AE+A+   +   +  + + V+ A P     + A         +Y+  LP  +    +E +FS  G+++N+RV+ D+ TG SRG  F+     +E  +AI +  G    G +  + V
Sbjct:   22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITV 181          
The following BLAST results are available for this feature:
BLAST of CX671478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
ROA2_BOVIN7.237e-1730.46Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_SAGOE9.451e-1730.46Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ELAV1_HUMAN9.451e-1728.57ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
DAZP1_HUMAN9.451e-1731.02DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]
ROA2_RAT1.234e-1630.46Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
NUCL_PONAB1.234e-1629.07Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MESAU1.234e-1629.07Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2[more]
NUCL_MACFA1.234e-1629.07Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN1.234e-1629.07Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
ELAV1_MOUSE1.234e-1629.17ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C11-F21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671478 ID=CX671478; Name=CX671478; organism=Citrus sinensis; type=EST; length=925bp
CAAAAGTGATGTGATTTCAGCTTTCAACTCCATAAGCAAATTTTCCATTA
AACTATCTGGCAGAAACTCAACAAATCTCATTCAAAAAAAAAAAAAAAAG
GGAAAAAAAAAGATAGTGAACCAGGACAGAGAAAGAGGGAAGAAAATAAA
TAGAGACCACCACTAGCAGACCTTGAATCTATGACATGTCATGTTCGGTC
AAAAGGAACTGCGTCTTTGTCTATCCTCTGCAACATTTACTCTGATTGCT
CTCCCATCCAGATTCTGTCCGTCAAGAGCAGCAATTGCGTCATTCAATTC
AGTCTCACTAGACATTGTAACAAAGCCAAAACCTCGTGAACGTCCAGTCT
CCCTGTCATAAACAACCCGGGCATTCACCACCTTACCATGCTCACTAAAA
ACTTGCTCTAGACGAGCATTATCCACTTCCCATGGCAGGTTGCCCACATA
GATTCTAAAACCAGGCTCAAACACACGAGGGGCGCGTTCAGGCTGTGTTC
CTCTTGGAGCAGCTTTATTTACCGTCAAAAGCCTTCCATCTATGTCATAT
CTGTGAAACATTTCCACAGCCTTTTCAGCTTCCTCAACAGTACTCATTGT
CACGAACCCAAAGCCACGACTCCGGTCAGTCTCCCTGTTGTAAATAACCT
CGGCAATCTCGACAGTTCCAGCCTTCTCAAAAAGCATAGCAAGCTTTTCA
CTATCAACATCATAGGGCAAGTTCCCAACAAACAACTTAGCATCCTCAGG
TGGTTCCACAAATTCCTCTTCCTCAAAAACGCCCTCTTCACCACTCTCCT
CCTGCCTTTCACCAGCCTCAACAACTGTGTCTTCGCCTTCGGGTTCCCCC
CCATCAGATAAATTCCCTTCAGTTTCATCGGCTCCTTGATTTTCCCAATT
CGGTTCTTCTTCCCCATTCTCTTCT
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