CX671477

Overview
NameCX671477
Unique NameCX671477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  186 DPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  187 DPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 203
            D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMF+ LGFF+QA VTG+GPV+NL  HL+DP  N
Sbjct:  174 DTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP  NN
Sbjct:  189 DPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 221
            D+L+PGGPFDPLGLA DPD F  LKVKEIKNGRLAM  MLGF+ QA VTGEGPVEN   HL DP A+N LT +
Sbjct:   43 DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAL 115          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  188 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP  NN
Sbjct:  188 DPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP  NN
Sbjct:  188 DPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  188 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  188 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of CX671477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB22_TOBAC1.954e-2375.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_TOBAC1.954e-2375.00Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2_DUNTE2.552e-2376.12Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA2.552e-2375.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_EUGGR2.552e-2372.60Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2G_SOLLC3.334e-2375.00Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2F_SOLLC3.334e-2373.53Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.334e-2373.53Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL3.334e-2375.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_PETSP3.334e-2375.00Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C10-F19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671477 ID=CX671477; Name=CX671477; organism=Citrus sinensis; type=EST; length=706bp
AGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAG
GATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAG
ACTTGCAATGTTTGCCATGCTTGGTTTCTTTCTCCAAGCTTATGTCACAG
GTGAAGGTCCAGTTGAGAACCTTGCTAAACATCTCAGTGATCCTTTTGCC
AACAACTTGCTTACCGTGATCTCCGGAAACGCAGAGAGAGCTCCCACCCT
GTGATTTCAGTTGTTCTGGTGTTCTTTTCACTCGAATCTAAAATGCATTG
TACATCTCATCATCAAGACATTTCCAAGATGTTGAAACCTTAAATGATCA
TGGCACTCGAATCCCTACTCTCTGAGTTATAGAGCTTGAGTGTTATTCAC
CTATAACCTCTTCTGATATATCATTTAAGCTAAATTGAATCTTGTTCTTA
TGATGCAAGACACGTAAAGGGGGTTAACCAAAGTTGGTTGGTGTGAGTGA
TTCGGCACTCTCACTCCTTAAGAGAGGTCAGGAGTTTAAGTCCCGCTCTC
GTATGGAATCACCACTTTAGTCAGTATTTTATCCTTTACGGGCCGACCTG
GTGCGAGCGAGGATTAGTCTGGGTTGTGGTACGGACTTAAAAGTGCCTCT
CACAATTGGAGCTCACTCAGGACTACCTCGTGGTTCAGATAAAAAAAAAA
AAAAAA
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