CX671477

Overview
NameCX671477
Unique NameCX671477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP  NN
Sbjct:  186 DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNN 253
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  127 DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 194
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA DP+ FA L+VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  187 DPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP  NN
Sbjct:  183 DPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  176 DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 243
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA+DP+ FA LKVKE KNGRLAMF+M GFF+QA VTG+GP+ENLA HL DP  NN
Sbjct:  188 DPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA DP+ FA +KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  186 DPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA+DP++ A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  185 DPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL  HL+DP  NN
Sbjct:  188 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNN 255
[Close]
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA D + FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  185 DPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
The following BLAST results are available for this feature:
BLAST of CX671477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB23_POLMU9.699e-2370.59Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_CUCSA9.699e-2372.06Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_PETSP9.699e-2373.53Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_MAIZE9.699e-2372.06Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA9.699e-2372.06Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP1.267e-2273.53Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB29_MAIZE1.654e-2272.06Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_APIGR1.654e-2272.06Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC2.161e-2272.06Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_HORVU2.822e-2273.53Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C10-F19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671477 ID=CX671477; Name=CX671477; organism=Citrus sinensis; type=EST; length=706bp
AGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAG
GATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAG
ACTTGCAATGTTTGCCATGCTTGGTTTCTTTCTCCAAGCTTATGTCACAG
GTGAAGGTCCAGTTGAGAACCTTGCTAAACATCTCAGTGATCCTTTTGCC
AACAACTTGCTTACCGTGATCTCCGGAAACGCAGAGAGAGCTCCCACCCT
GTGATTTCAGTTGTTCTGGTGTTCTTTTCACTCGAATCTAAAATGCATTG
TACATCTCATCATCAAGACATTTCCAAGATGTTGAAACCTTAAATGATCA
TGGCACTCGAATCCCTACTCTCTGAGTTATAGAGCTTGAGTGTTATTCAC
CTATAACCTCTTCTGATATATCATTTAAGCTAAATTGAATCTTGTTCTTA
TGATGCAAGACACGTAAAGGGGGTTAACCAAAGTTGGTTGGTGTGAGTGA
TTCGGCACTCTCACTCCTTAAGAGAGGTCAGGAGTTTAAGTCCCGCTCTC
GTATGGAATCACCACTTTAGTCAGTATTTTATCCTTTACGGGCCGACCTG
GTGCGAGCGAGGATTAGTCTGGGTTGTGGTACGGACTTAAAAGTGCCTCT
CACAATTGGAGCTCACTCAGGACTACCTCGTGGTTCAGATAAAAAAAAAA
AAAAAA
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