CX671476

Overview
NameCX671476
Unique NameCX671476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  199 DPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANN 253
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:  189 DPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   37 DPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  186 DPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  186 DPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D ++PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  195 DPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  186 DPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
[Close]
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = -3 
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  187 DPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254
The following BLAST results are available for this feature:
BLAST of CX671476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB2A_PINSY1.521e-2375.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB26_PETSP1.521e-2373.53Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC1.521e-2373.53Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB2_PHYPA1.987e-2375.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2D_SOLLC1.987e-2375.00Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.987e-2375.00Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC1.987e-2375.00Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2B_PINSY1.987e-2373.53Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_SOLLC1.987e-2375.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB25_NICPL1.987e-2375.00Chlorophyll a-b binding protein E, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C10-F19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671476 ID=CX671476; Name=CX671476; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTTTTATCTGAACCACGAGGTAGTCCTGAGTGAGCTCC
AATTGTGAGAGGCACTTTTAAGTCCGTACCACAACCCAGACTAATCCTCG
CTCGCACCAGGTCGGCCCGTAAAGGATAAAATACTGACTAAAGTGGTGAT
TCCATACGAGAGCGGGACTTAAACTCCTGACCTCTCTTAAGGAGTGAGAG
TGCCGAATCACTCACACCAACCAACTTTGGTTAACCCCCTTTACGTGTCT
TGCATCATAAGAACAAGATTCAATTTAGCTTAAATGATATATCAAAAGAG
GTTATAGGTGAATAACACTCAAGCTCTATAACTCAAAGAGTAGGGATTCG
AGTGCCATGATCATTTAAGGTTTCAACATCTTGGAAATGTCTTGATGATG
AGATGTACAATGCATTTTAGATTCGAGTGAAAAGAACACCAGAACAACTG
AAATCACAGGGTGGGAGCTCTCTCTGCGTTTCCGGAGATCACGGTAAGCA
AGTTGTTGGCAAAAGGATCACTGAGATGTTTAGCAAGGTTCTCAACTGGA
CCTTCACCTGTGACATAAGCTTGGAGAAAGAAACCAAGCATGGCAAACAT
TGCAAGTCTTCCATTCTTGATCTCCTTCACTTTTAGCAATGCAAATTGGT
CAGGATCCTTTGCTAATCCCAGTGGGTCAAATGGACCACCTGGGTGAAGC
TTGTCCTCCT
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