CX671476

Overview
NameCX671476
Unique NameCX671476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.859e-21
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = -3
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D L+PGG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M GFF+ A VTG+GP+ENLA HL+DP  NN
Sbjct:  149 DPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNN 216          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = -3
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D L+PG  FDPLGLA DPD FA LKVKEIKNGRLA F+M GFF+QA VTG+GPV+NL  HL++P  NN
Sbjct:  174 DPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = -3
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D L+PGG FDPLGLA DP+ F  LKVKE+K GRLAM +M GFF+QA VTG+GP+ENLA H++DP  NN
Sbjct:  186 DPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = -3
Query:  502 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 699
            L+PGG  FDPLGLA DP  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL DP ANN
Sbjct:  190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = -3
Query:  502 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 699
            L+PGG  FDPLGLA DP  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL +P ANN
Sbjct:  187 LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = -3
Query:  493 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 705
            D  +PGGP F+PLG  KD      LK+KEIKNGRLAM A+LG+F+QA VTG GP +NL  HL+DP  NN+LT
Sbjct:  197 DPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLT 268          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = -3
Query:  487 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLAKHLSDPFANNLLTVI 708
            E K +PGG FDPLG +KDP +F  LKVKEIKNGRLA+ A++GF +Q  AY+ G GP+ENLA HL+DP+ NN+  VI
Sbjct:  164 EKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL-GTGPLENLATHLADPWHNNIGDVI 238          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = -3
Query:  487 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 708
            E K +PGG FDPLG +KDP +F  LK+KEIKNGRLAM A +GF + Q+   G GP+ENLA HL+DP+ NN+  ++
Sbjct:  163 EKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 237          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  493 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 696
            +PGGPF +PLG  KD      LK+KE+KNGRLAM A+LG+F+Q  VTG GP +NL  H++DP  NN+LT
Sbjct:  202 YPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLT 270          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  478 EDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 708
            E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA  TG+GP+ N A HLSDP    ++   S +
Sbjct:  213 EKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290          
The following BLAST results are available for this feature:
BLAST of CX671476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB21_PEA1.859e-2170.59Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_CHLRE7.066e-2170.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_MAIZE7.066e-2167.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU1.574e-2074.63Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC2.685e-2073.13Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB13_SOLLC1.247e-1761.11Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB11_SOLLC1.247e-1761.84Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU3.629e-1757.33Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB23_PEA3.072e-1657.97Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4A_ARATH3.397e-1552.56Chlorophyll a-b binding protein CP29.1, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C10-F19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671476 ID=CX671476; Name=CX671476; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTTTTATCTGAACCACGAGGTAGTCCTGAGTGAGCTCC
AATTGTGAGAGGCACTTTTAAGTCCGTACCACAACCCAGACTAATCCTCG
CTCGCACCAGGTCGGCCCGTAAAGGATAAAATACTGACTAAAGTGGTGAT
TCCATACGAGAGCGGGACTTAAACTCCTGACCTCTCTTAAGGAGTGAGAG
TGCCGAATCACTCACACCAACCAACTTTGGTTAACCCCCTTTACGTGTCT
TGCATCATAAGAACAAGATTCAATTTAGCTTAAATGATATATCAAAAGAG
GTTATAGGTGAATAACACTCAAGCTCTATAACTCAAAGAGTAGGGATTCG
AGTGCCATGATCATTTAAGGTTTCAACATCTTGGAAATGTCTTGATGATG
AGATGTACAATGCATTTTAGATTCGAGTGAAAAGAACACCAGAACAACTG
AAATCACAGGGTGGGAGCTCTCTCTGCGTTTCCGGAGATCACGGTAAGCA
AGTTGTTGGCAAAAGGATCACTGAGATGTTTAGCAAGGTTCTCAACTGGA
CCTTCACCTGTGACATAAGCTTGGAGAAAGAAACCAAGCATGGCAAACAT
TGCAAGTCTTCCATTCTTGATCTCCTTCACTTTTAGCAATGCAAATTGGT
CAGGATCCTTTGCTAATCCCAGTGGGTCAAATGGACCACCTGGGTGAAGC
TTGTCCTCCT
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