CX671474

Overview
NameCX671474
Unique NameCX671474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:909..1795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.769e-81
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = -3 
Query:  436 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 888
            QYR+LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  280 QYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.311e-81
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = -3 
Query:  436 YRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 885
            YR+LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  281 YRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.018e-81
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = -3 
Query:  436 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 888
            QYR LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ++NVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSM+STFIGNSTSIQEMFRRVSEQFTAMFR KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  280 QYRTLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRPKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.941e-81
Identity = 144/151 (95.36%), Postives = 149/151 (98.68%), Query Frame = -3 
Query:  436 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 888
            QYRALTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  280 QYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPIGLKMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 6.723e-81
Identity = 145/151 (96.03%), Postives = 148/151 (98.01%), Query Frame = -3 
Query:  436 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 888
            QYRALTVPELTQQMWDAKNMMC+ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  282 QYRALTVPELTQQMWDAKNMMCSADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLPMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATA 432
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.723e-81
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = -3 
Query:  436 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 888
            QYRAL+VPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKS+VCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  280 QYRALSVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTGLRMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 8.780e-81
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = -3 
Query:  436 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 888
            QYR L+VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  280 QYRTLSVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.147e-80
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = -3 
Query:  436 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 888
            QYRALTVPELTQQMWDAKNM+CAADPRHGRYLTASA+FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQDATA
Sbjct:  280 QYRALTVPELTQQMWDAKNMVCAADPRHGRYLTASAVFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLVSEYQQYQDATA 430
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.147e-80
Identity = 143/151 (94.70%), Postives = 148/151 (98.01%), Query Frame = -3 
Query:  436 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 888
            QYRALT+PELTQQMWDA+NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL+M+STF+GNSTSIQEMFRRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A
Sbjct:  280 QYRALTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLTMSSTFMGNSTSIQEMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVA 430
[Close]
BLAST of CX671474 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.147e-80
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = -3 
Query:  436 YRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 885
            YRALTVPELTQQMWDAKNMMCAADPRHGRYLTASA FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCD+PPRGL MA TF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  281 YRALTVPELTQQMWDAKNMMCAADPRHGRYLTASACFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDMPPRGLKMAGTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
The following BLAST results are available for this feature:
BLAST of CX671474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB2_ARATH1.769e-8196.03Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB5_WHEAT2.311e-8197.33Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB2_DAUCA3.018e-8196.03Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB7_MAIZE3.941e-8195.36Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB4_MAIZE6.723e-8196.03Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB2_SOYBN6.723e-8196.03Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB1_PEA8.780e-8195.36Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB9_GOSHI1.147e-8096.03Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB7_GOSHI1.147e-8094.70Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB4_WHEAT1.147e-8095.33Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C09-F17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671474 ID=CX671474; Name=CX671474; organism=Citrus sinensis; type=EST; length=890bp
CTTTTTTTTTACCAAGGAAAAGAAATAGCATATCACATTATGGCATAATA
GACAGTAACATAATAACATCATCGACCACAGAACATAAGAAGACAATGGC
TAAGGATAATAGAATACAAAAATAGATCAAATCCAGAATAGATAGCAAGG
TAAAGGTAGCACACACTACTACTTTCAAAACATGCATCCATCCTTTAATT
TCTCCATCCTCAATAGTCGATCCTCATCGATCCCATCATCCATCACTCAC
TTTACTGCTACTTGATGTAAAAAACTCGAGAAAGAAAAACTATAACACAT
CATAGATCATTTTTTGCAATCCCAAGCAAGGTTGACAAAACCAGCTACAC
AGACAAATATGCATCATACACAACTTCTTCAAATATGATGCTCCAATTCT
CCCTCTTCCTCATCTTCATACTCGCCTTCCTCATCGGCGGTGGCATCCTG
GTACTGCTGGTACTCAGACACGAGGTCATTCATATTGCTCTCAGCTTCAG
TGAACTCCATTTCATCCATCCCTTCACCAGTGTACCAGTGAAGGAAAGCC
TTTCTCCTAAACATAGCTGTGAATTGCTCACTCACTCTTCGGAACATTTC
TTGGATGGATGTTGAGTTCCCGATGAAGGTGGATGCCATGGAGAGACCTC
TGGGAGGAATGTCACAAACACTGGACTTCACATTGTTTGGAATCCACTCC
ACAAAGTAGGAAGAGTTTTTGTTTTGAACATTGATCATCTGCTCGTCAAC
TTCCTTGGTGCTCATTTTACCCCTGAACATGGCAGAAGCAGTGAGGTAAC
GACCATGCCTTGGGTCGGCAGCACACATCATGTTCTTGGCATCCCACATT
TGTTGGGTAAGTTCTGGGACTGTCAAGGCACGGTACTGCT
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