CX671466

Overview
NameCX671466
Unique NameCX671466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 58/153 (37.91%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  183 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 611
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:  103 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAV 253          
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 50/148 (33.78%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  174 ASKRILKELKDLQKD-PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 611
            ASKR+ KEL DL K+ PP          ++  W   ++ P   PY    F + I FP +YP KPP + F TK++HPNI+ +G +CL ++  E W P     +VL ++  L++ PN ++P+  E+A +   D   +   A  +T +Y +
Sbjct:    3 ASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLL-PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQYGV 149          
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 57/153 (37.25%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  183 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 611
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:   62 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIRHETIRVAV 212          
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 57/153 (37.25%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  183 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 611
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:   62 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIRHETIRVAV 212          
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  174 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 575
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + ++++  +E
Sbjct:   30 AQLRIQKDINELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 55/176 (31.25%), Postives = 85/176 (48.30%), Query Frame = 3
Query:  180 KRILKELKDLQKDPPTSCSA---------GPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT----------------------KVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYEATARSWTQKYA 608
            KR+LKE + ++K+     S           P+ + +F W A I GP  SP+   ++ + I  P +YP  PPK+ F                        K+ HPN+N   G ICLDIL+++WSPA T+   L++I  LL +P P  PL  ++A++ K  D   Y+     +  KY+
Sbjct:    6 KRLLKEYRAVKKELTEKRSPIHDTGIVDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTAYKDLVHYYIAKYS 181          
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  174 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 575
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + ++++  +E
Sbjct:   30 AQLRIQKDITELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 46/134 (34.33%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  174 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 575
            A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + ++++  +E
Sbjct:   30 AQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 46/134 (34.33%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  174 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 575
            A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + ++++  +E
Sbjct:   30 AQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CX671466 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 46/134 (34.33%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  174 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 575
            A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + ++++  +E
Sbjct:   30 AQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
The following BLAST results are available for this feature:
BLAST of CX671466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2Z_HUMAN3.428e-1837.91Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UB2L6_RAT3.428e-1833.78Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBE2Z_XENTR4.477e-1837.25Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UBE2Z_XENLA4.477e-1837.25Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBC12_XENTR5.847e-1834.81NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBCX_PICAN7.637e-1831.25Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC12_XENLA7.637e-1834.81NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE9.974e-1834.33NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN9.974e-1834.33NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN9.974e-1834.33NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C04-F7-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671466 ID=CX671466; Name=CX671466; organism=Citrus sinensis; type=EST; length=731bp
AAGAGATTGTAGAGGAGAGAGGTCGGGACGGCCAGTAGCCGCCGCAGATC
TGCTCCGAAGCCGTTCCCCTTTCTCACTGCTATTGCCCTCCGATCTCCTT
CTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTGGCTTTAACTTT
TAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAAGGAACTC
AAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGTCCGGTGGC
TGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCCCCTGATAGTC
CATATGCAGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCCAGATTAT
CCCTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCAAA
CATCAACAGCAATGGAAGCATATGTCTTGATATCCTTAAAGAACAGTGGA
GCCCAGCTCTTACCATTTCAAAGGTCCTGCTTTCTATCTGCTCGTTGCTT
ACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTGCTCACATGTA
CAAGTCCGACAAGGCCAAATATGAAGCCACTGCCAGGAGCTGGACACAGA
AGTATGCCATGGGATAGTTGTTTGGATATTGCAGAAATGGAACTCATTTA
TATGAAATATGTTGTGTTTTTTTCTCCTTTTTCTTCAATCTTGCTTCGGG
AAGGGGATGTTTTGTATTTTAGTAATGAGGA
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