CX671462

Overview
NameCX671462
Unique NameCX671462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B_DROSI (Histone H2B OS=Drosophila simulans GN=His2B PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B_DROSE (Histone H2B OS=Drosophila sechellia GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B_DROOR (Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B_DROME (Histone H2B OS=Drosophila melanogaster GN=His2B PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B_DROMA (Histone H2B OS=Drosophila mauritiana GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B_DROHY (Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B_DROER (Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B_ANOGA (Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=2 SV=5)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 74/89 (83.15%), Postives = 84/89 (94.38%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 506
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B_CAIMO (Histone H2B OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.870e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVR +LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRSLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CX671462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_DROSI1.431e-3684.44Histone H2B OS=Drosophila simulans GN=His2B PE=3 S... [more]
H2B_DROSE1.431e-3684.44Histone H2B OS=Drosophila sechellia GN=His2B PE=3 ... [more]
H2B_DROOR1.431e-3684.44Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3[more]
H2B_DROME1.431e-3684.44Histone H2B OS=Drosophila melanogaster GN=His2B PE... [more]
H2B_DROMA1.431e-3684.44Histone H2B OS=Drosophila mauritiana GN=His2B PE=3... [more]
H2B_DROHY1.431e-3684.44Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2[more]
H2B_DROER1.431e-3684.44Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=... [more]
H2B_ANOGA1.431e-3684.44Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=... [more]
H2B1C_HUMAN1.431e-3683.15Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]
H2B_CAIMO1.870e-3683.33Histone H2B OS=Cairina moschata PE=3 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11C01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C01-F1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671462 ID=CX671462; Name=CX671462; organism=Citrus sinensis; type=EST; length=792bp
TTTACTCTTATCCTTTCGAAGAAAAAAGAAAAGAAAATATCTACAAGCCT
TACCTTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGAAGCCGGC
TGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGC
CGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCC
TCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGTATCGAGACTTACAA
GATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATCGGAATCT
CGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAG
AAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGAC
GATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTG
AGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTT
ACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGGATTCGGGTGTTA
TGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGT
CGTTTTATGTTTTTTGTTTTTAAATCTTTGTTGGATTTTTAGGGTTTGTT
TGGATGTACTAGAAATTTGGACCTGATCCGGGTGATGTGCATGTTCATTA
TGTTAGAATATGAAAATGAAATATGATTTAAGGAAGAAACCAAACAGAAG
AGAGAGAAAAAGGGAAAGAGGGAAGAAGGAGAGAGAGAGAGA
back to top