CX671462

Overview
NameCX671462
Unique NameCX671462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671462_ssr779 microsatellite CX671462_ssr779:779..792. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671462_ssr210 microsatellite CX671462_ssr210:210..221. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113 contig Csv1_Contig1113:44..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2BWT_HUMAN (Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 497
            +++  Y  +VLKQVH  + +S +A+ +M+S ++DI +++A EA RLAR  K+ TIT+ E + AVRL+LPG++ K A SEGTKAV +
Sbjct:   79 DSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGRLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164          
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2BFM_HUMAN (Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  240 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 497
            +++  Y  +VLKQVH  + +S +A+ +M+S I+DI +++A EA +LA Y K+ TITSR+IQ AVRL+LPG++ K A ++GT A  +
Sbjct:  161 DSFTPYFPRVLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 246          
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 41/91 (45.05%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  237 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            +  Y +YI +VLK+V P  GISS+ + I+N+ IND+FE+++ EA  L  Y K+ T+T  +I+ AV L+LP +LAK+AV+ G +AV ++  S
Sbjct:   32 LRNYSLYINRVLKEVVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQRYVRS 122          
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.627e-14
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  246 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            Y +YI +VLK+V P+ GISS ++ IMN  INDIFE++A EA +     K+ T+T  +IQ AV L+LP +LA  AV+ G+KAV +F  S
Sbjct:   36 YSLYINRVLKEVVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAVHRFIHS 123          
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2BV1_DICDI (Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.954e-13
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  252 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            IYI K++KQ++P   I  K++ I+ S I D    +  EA  L + + K T+++R++QT+VRL   GE+++HAVSEG K VT F S+
Sbjct:   18 IYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVTNFNSA 103          
The following BLAST results are available for this feature:
BLAST of CX671462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BWT_HUMAN2.807e-1647.67Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=... [more]
H2BFM_HUMAN3.666e-1646.51Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2... [more]
H2BV_BOVIN1.067e-1545.05Histone H2B subacrosomal variant OS=Bos taurus GN=... [more]
H2BV_MOUSE2.627e-1450.00Histone H2B subacrosomal variant OS=Mus musculus G... [more]
H2BV1_DICDI4.954e-1343.02Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C01-F1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671462 ID=CX671462; Name=CX671462; organism=Citrus sinensis; type=EST; length=792bp
TTTACTCTTATCCTTTCGAAGAAAAAAGAAAAGAAAATATCTACAAGCCT
TACCTTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGAAGCCGGC
TGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGC
CGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCC
TCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGTATCGAGACTTACAA
GATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATCGGAATCT
CGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAG
AAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGAC
GATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTG
AGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTT
ACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGGATTCGGGTGTTA
TGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGT
CGTTTTATGTTTTTTGTTTTTAAATCTTTGTTGGATTTTTAGGGTTTGTT
TGGATGTACTAGAAATTTGGACCTGATCCGGGTGATGTGCATGTTCATTA
TGTTAGAATATGAAAATGAAATATGATTTAAGGAAGAAACCAAACAGAAG
AGAGAGAAAAAGGGAAAGAGGGAAGAAGGAGAGAGAGAGAGA
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