CX671462

Overview
NameCX671462
Unique NameCX671462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671462_ssr779 microsatellite CX671462_ssr779:779..792. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671462_ssr210 microsatellite CX671462_ssr210:210..221. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113 contig Csv1_Contig1113:44..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSJ (Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.335e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  234 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSI (Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.335e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  234 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSJ (Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.335e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  234 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.335e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  234 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B3_WHEAT (Histone H2B.3 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.335e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  234 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 138
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.335e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  234 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.335e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  234 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSJ (Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.335e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  234 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSI (Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.335e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  234 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CX671462 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.579e-41
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 3 
Query:  237 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            +ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
The following BLAST results are available for this feature:
BLAST of CX671462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B7_ORYSJ7.335e-4191.30Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B7_ORYSI7.335e-4191.30Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B4_ORYSJ7.335e-4191.30Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B4_ORYSI7.335e-4191.30Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_WHEAT7.335e-4191.30Histone H2B.3 OS=Triticum aestivum PE=1 SV=3[more]
H2B3_ORYSJ7.335e-4191.30Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B3_ORYSI7.335e-4191.30Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B10_ORYSJ7.335e-4191.30Histone H2B.10 OS=Oryza sativa subsp. japonica GN=... [more]
H2B10_ORYSI7.335e-4191.30Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_WHEAT9.579e-4192.31Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C01-F1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671462 ID=CX671462; Name=CX671462; organism=Citrus sinensis; type=EST; length=792bp
TTTACTCTTATCCTTTCGAAGAAAAAAGAAAAGAAAATATCTACAAGCCT
TACCTTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGAAGCCGGC
TGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGC
CGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCC
TCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGTATCGAGACTTACAA
GATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATCGGAATCT
CGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAG
AAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGAC
GATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTG
AGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTT
ACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGGATTCGGGTGTTA
TGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGT
CGTTTTATGTTTTTTGTTTTTAAATCTTTGTTGGATTTTTAGGGTTTGTT
TGGATGTACTAGAAATTTGGACCTGATCCGGGTGATGTGCATGTTCATTA
TGTTAGAATATGAAAATGAAATATGATTTAAGGAAGAAACCAAACAGAAG
AGAGAGAAAAAGGGAAAGAGGGAAGAAGGAGAGAGAGAGAGA
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