CX671456

Overview
NameCX671456
Unique NameCX671456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 7.232e-86
Identity = 150/171 (87.72%), Postives = 160/171 (93.57%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI ISGINGEVMPGQWEFQVGP  GIS+GDQ+WVARY+LERITEI+GV++SFD KP+ GDWNGAGAH NYSTK+MRNDGG EVIKKAI KL L+H EHIAAYGEGNERRLTGKHETADINTF WGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL
Sbjct:  183 GIGISGINGEVMPGQWEFQVGPVEGISSGDQVWVARYLLERITEISGVIVSFDPKPVPGDWNGAGAHCNYSTKTMRNDGGLEVIKKAIGKLQLKHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 353          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.611e-85
Identity = 151/171 (88.30%), Postives = 161/171 (94.15%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVV+S D KPI GDWNGAGAH NYSTKSMRN+GGFE+IKKAI KL  +H++HIAAYGEGNERRLTGKHETA I+ F WGVANRGAS+RVGRDTEKEGKGYFEDRRPASNM+PYVVTSMIAETTIL
Sbjct:  182 GINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSLDPKPIPGDWNGAGAHTNYSTKSMRNEGGFEIIKKAIAKLETKHAQHIAAYGEGNERRLTGKHETASIHKFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMEPYVVTSMIAETTIL 352          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.688e-85
Identity = 150/174 (86.21%), Postives = 163/174 (93.68%), Query Frame = -1
Query:  253 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 774
            GINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FD KPI GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGAS+ VG+ TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct:  183 GINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVAVGQ-TEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 355          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.388e-83
Identity = 144/174 (82.76%), Postives = 155/174 (89.08%), Query Frame = -1
Query:  253 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 774
            GINISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVLS D KPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA INTF WGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVTS++AE+T+LW+P
Sbjct:  240 GINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTSLLAESTLLWEP 413          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.851e-82
Identity = 142/174 (81.61%), Postives = 155/174 (89.08%), Query Frame = -1
Query:  253 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 774
            GINISG NGEVMPGQWEFQVGP+VGI AGD +W ARY+LERITE AGVVL+ D KPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA I+ F WGVANRG SIRVGRDTEK+GKGY EDRRPASNMDPY+VTS++AETT+LW+P
Sbjct:  239 GINISGTNGEVMPGQWEFQVGPSVGIEAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHMEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEP 412          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.843e-81
Identity = 140/171 (81.87%), Postives = 157/171 (91.81%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            G++I G NGEVMPGQWEFQ+ P VGI AGDQLWVARYILERITEI GV++SFD KPIQGDWNGA AH N+STKSMR DGG ++IK+AI+KL ++H +HIAAYGEGNERRLTGKHETADINTF WGVA+RGAS+RVGRDTEKEGKGYFEDRRP+SNMDPY+VTSMIAETTIL
Sbjct:  183 GLSIGGANGEVMPGQWEFQISPTVGIGAGDQLWVARYILERITEICGVIVSFDPKPIQGDWNGAAAHTNFSTKSMRKDGGLDLIKEAIKKLEVKHKQHIAAYGEGNERRLTGKHETADINTFSWGVADRGASVRVGRDTEKEGKGYFEDRRPSSNMDPYLVTSMIAETTIL 353          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.408e-81
Identity = 141/174 (81.03%), Postives = 153/174 (87.93%), Query Frame = -1
Query:  253 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 774
            GINISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ D KPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI AYGEGNERRLTGKHETA INTF WGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVT+++AE+T+LW+P
Sbjct:  239 GINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEP 412          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.408e-81
Identity = 141/174 (81.03%), Postives = 154/174 (88.51%), Query Frame = -1
Query:  253 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 774
            GINISG NGEVMPGQWEFQVGP+VGI AGD +W ARY+LERITE AGVVL+ D KPI GDWNGAG H NYSTKSMR +GGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA I++F WGVA+RG SIRVGRDTEKEGKGY EDRRPASNMDPYVVT ++AETT+LW+P
Sbjct:  243 GINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGVVLTLDPKPIDGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTGLLAETTLLWEP 416          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.364e-81
Identity = 140/174 (80.46%), Postives = 154/174 (88.51%), Query Frame = -1
Query:  253 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 774
            GINISG NGEVMPGQWEFQVGP+VGI AGD +W ARY+LERITE AGVVL+ D KPI+GDWNGAG H NYSTKSMR +GGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA I+ F WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+VTS++AETT+LW+P
Sbjct:  241 GINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEP 414          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.561e-80
Identity = 140/174 (80.46%), Postives = 152/174 (87.36%), Query Frame = -1
Query:  253 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 774
            GINISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ D KPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI AYGEGNERRLTGKHETA IN F WGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVT+++AE+T+LW+P
Sbjct:  241 GINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEP 414          
The following BLAST results are available for this feature:
BLAST of CX671456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLN13_ARATH7.232e-8687.72Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA1_DAUCA1.611e-8588.30Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNA4_MAIZE4.688e-8586.21Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA4_PHAVU4.388e-8382.76Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_BRANA4.851e-8281.61Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLN15_ARATH1.843e-8181.87Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA2_MEDSA2.408e-8181.03Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_DAUCA2.408e-8181.03Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_ARATH5.364e-8180.46Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNA2_PEA1.561e-8080.46Glutamine synthetase leaf isozyme, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B08-D15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671456 ID=CX671456; Name=CX671456; organism=Citrus sinensis; type=EST; length=774bp
TTTTGAACAAAAGGAATTGACCCTTCCATAATGTTATTAAATTAAATGTT
TACATTATTCAACCCAATAGGACAGCAGGAAGCAACGAACCCACTGTTGC
AAATACAGGGGCAGAGATTGAAACAAGACAAAAGCTGAACTACTACTAAT
AAAGCATCCTTAGCAGAACACAATTCTGTCGTGAACTCGTGAATCCTGAG
TAAAGCCAGCAGATCAAACAAAATATTTCAAAGGTTGCTAGAGGAGCATT
CATGGCTTCCACAGAATAGTGGTTTCTGCAATCATGGAGGTGACAACATA
TGGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAAAGTAACCCTTTCCTT
CTTTCTCTGTGTCTCGTCCAACACGGATTGATGCCCCACGGTTAGCAACA
CCCCATTTGAAAGTGTTGATGTCAGCTGTTTCATGTTTGCCAGTGAGTCG
GCGTTCATTGCCTTCACCATATGCGGCAATGTGCTCACTGTGCCTCAGTC
CAAGTTTCTCAATTGCTTTCTTAATAACCTCAAAGCCTCCATCGTTCCTC
ATCGACTTGGTGCTGTAATTTGCGTGAGCACCAGCTCCATTCCAGTCACC
CTGAATTGGCTTGAGATCGAAAGAAAGCACAACTCCAGCAATCTCTGTAA
TCCTCTCTAAAATATAGCGGGCAACCCACAACTGATCTCCAGCAGAAATT
CCAACAGCGGGACCAACTTGGAACTCCCACTGCCCCGGCATGACTTCTCC
ATTGATGCCACTGATGTTGATTCC
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