CX671456

Overview
NameCX671456
Unique NameCX671456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:709..1482. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.996e-60
Identity = 109/168 (64.88%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G+NISGIN EVMP QWEFQVGP  GI+  DQLW+ARY L R+ E  GV +S   KP++GDWNGAG H N STK MR  GG + I+ AIEKL  RH+EHI  YG  NE+RLTG+HETA ++TF  GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  186 GVNISGINAEVMPSQWEFQVGPCEGIAMADQLWIARYFLHRVAEEFGVKVSLHPKPLKGDWNGAGCHTNVSTKLMRAPGGMKYIEDAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMSTFSSGVANRGASIRIPRSVNKEGYGYFEDRRPASNIDPYLVTGIMCET 353          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.817e-60
Identity = 108/168 (64.29%), Postives = 126/168 (75.00%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G+ ISGIN EVMP QWEFQVGP  GI+ GD+LWV RY+L R+ E  GV +SF  KP++GDWNGAG H N ST+ MR  GG   I++AI+KL  RH EHI  YG  NE RLTG+HETA + TF  GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT +I ET
Sbjct:  183 GLRISGINAEVMPSQWEFQVGPCTGITMGDELWVGRYLLHRVAEEFGVKVSFHPKPLKGDWNGAGCHTNVSTREMRQPGGMRYIEEAIDKLSKRHKEHIKLYGSDNELRLTGRHETASMATFSSGVANRGASIRIPRSVSKEGFGYFEDRRPASNIDPYLVTGIICET 350          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.903e-60
Identity = 108/172 (62.79%), Postives = 133/172 (77.33%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRN-DGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            G+NISG+N EV+P QWE+QVGP  GI+ GD +W++RYI+ R+ E+  V +SFD KPI GDWNG+G H NYSTK+ R    G++VI++   KL  RH+ HIAAYGEGNERRLTGKHET+ ++ F WGVANRG SIRVGR    E  GY+EDRRPASN+D YVVT +I ETTIL
Sbjct:  210 GVNISGVNAEVLPSQWEYQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRTAPDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVGRMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 381          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.163e-59
Identity = 106/168 (63.10%), Postives = 126/168 (75.00%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G+ ISGIN EVMP QWEFQVGP  GI  GDQLW+ARY L R+ E  G+ +SF  KP++GDWNGAG H N STK MR  GG + I++AIEKL  RH+EHI  YG  N+ RLTG+HETA +  F  GVANRG+SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  184 GLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHTNVSTKEMRQPGGMKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.163e-59
Identity = 105/168 (62.50%), Postives = 130/168 (77.38%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G+ ISG N EVMP QWEFQVGP  GI  GD LW+AR++L R++E  G  +SFD KPI GDWNGAG H N+ST++MR +GG + I+ AI+KL  RH EHIA YGEGN++RLTG+HET  I++F +GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T +I ET
Sbjct:  188 GVKISGTNAEVMPAQWEFQVGPCDGIEMGDHLWLARFLLHRVSEEFGAKVSFDPKPIPGDWNGAGLHTNFSTENMRKEGGMKYIEDAIKKLEARHKEHIAVYGEGNDKRLTGRHETGSIDSFTYGVANRGASIRIPRECGAKGYGYFEDRRPASNADPYQITGIIMET 355          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.983e-59
Identity = 105/168 (62.50%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G+ ISGIN EVMP QWE+QVGP  GI  GD LW++R++L R+ E  GV +SFD KPI+GDWNGAG H N ST S R +GG + I+  ++KL  RH EHIA YGEGNE RLTG+HET +I+ F +GVA+RG SIR+ R   K+GKGYFEDRRPASN DPY +T +IAET
Sbjct:  172 GVKISGINAEVMPSQWEYQVGPCHGIEMGDHLWISRFLLHRVAEEFGVKISFDPKPIKGDWNGAGLHTNVSTTSTRAEGGIKAIESYMKKLEARHVEHIAVYGEGNEERLTGRHETGNIDKFSYGVADRGGSIRIPRQVAKDGKGYFEDRRPASNADPYQITGIIAET 339          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.843e-59
Identity = 107/168 (63.69%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G+ ISG N EVMP QWEFQVGP VGI  GD LW+AR++L RI E  G  +S D KPI GDWNGAG H+N+STK MR +GG + I+ AI+KL  RH EHIA YGEGNE+RLTG+HET  I+ F +GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T ++ ET
Sbjct:  186 GVKISGTNAEVMPAQWEFQVGPCVGIEMGDHLWLARFLLARIAEEFGAKVSVDPKPIPGDWNGAGLHSNFSTKEMRVEGGMKHIEAAIKKLEGRHKEHIAVYGEGNEKRLTGRHETGAIDQFSYGVANRGASIRIPREYTAKGYGYFEDRRPASNADPYRITGILMET 353          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.286e-58
Identity = 103/168 (61.31%), Postives = 130/168 (77.38%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            GI ISGIN EV+P QWEFQVGP VGI  GD LW++RY+L R+ E  GV +SF  KPI GDWNG+G H N ST++MR++GG + I++AI+KL  RH+EHIA YG+ N  RLTG+HET +I+ F +GVA+RG+SIR+ R   KEGKGYFEDRRPASN  PY +T ++ ET
Sbjct:  186 GIKISGINAEVLPSQWEFQVGPCVGIEMGDHLWISRYLLHRVAEEFGVKISFHPKPIPGDWNGSGLHTNVSTQAMRDEGGMKAIEEAIQKLSTRHAEHIAVYGDDNTLRLTGRHETGNIDAFSYGVADRGSSIRIPRSCAKEGKGYFEDRRPASNACPYQITGIMMET 353          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.193e-58
Identity = 104/168 (61.90%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G++ISGIN EVMP QWEFQVGP  GI  GD+LW+ARY+L+R+ E  GV +SF  KP++G+WNGAG H N STKSMR  GG + I+ A+ KL  RH EH+  YG  N++RLTG+HETA I  F  GVANRGAS+R+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  183 GVDISGINAEVMPSQWEFQVGPCEGIQMGDELWIARYLLQRVAEEFGVKVSFHPKPLKGEWNGAGCHTNVSTKSMRLPGGMKSIEVALSKLAKRHKEHMLLYGADNDQRLTGRHETASIEGFSSGVANRGASVRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMVET 350          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.740e-58
Identity = 101/171 (59.06%), Postives = 130/171 (76.02%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI ISG+NGEV+P QWE+QVGP  GI+ GDQ+W++RY++ R+ E+  V ++FD KPI GDWNG+G H N+S +   +    +  + + +KLG RH  HIAAYGEGNERRLTGKHET+ +N F WGVANRG SIRVGR    E  GY+EDRRP+SN+DPYVVT ++ ETT+L
Sbjct:   64 GIQISGVNGEVLPSQWEYQVGPVEGIAMGDQMWMSRYLMYRVAELFNVEVTFDPKPIPGDWNGSGGHVNFSNRQPESPPAGKQSRSSAKKLGKRHRWHIAAYGEGNERRLTGKHETSSMNDFSWGVANRGCSIRVGRMVPVEKCGYYEDRRPSSNLDPYVVTRLLVETTLL 234          
The following BLAST results are available for this feature:
BLAST of CX671456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_KLULA3.996e-6064.88Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_ASHGO6.817e-6064.29Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA1_CHLRE8.903e-6062.79Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_YEAST1.163e-5963.10Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_NEUCR1.163e-5962.50Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_EMENI1.983e-5962.50Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_COLGL9.843e-5963.69Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_TUBBO1.286e-5861.31Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA_DEBHA2.193e-5861.90Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA_DUNSA3.740e-5859.06Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B08-D15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671456 ID=CX671456; Name=CX671456; organism=Citrus sinensis; type=EST; length=774bp
TTTTGAACAAAAGGAATTGACCCTTCCATAATGTTATTAAATTAAATGTT
TACATTATTCAACCCAATAGGACAGCAGGAAGCAACGAACCCACTGTTGC
AAATACAGGGGCAGAGATTGAAACAAGACAAAAGCTGAACTACTACTAAT
AAAGCATCCTTAGCAGAACACAATTCTGTCGTGAACTCGTGAATCCTGAG
TAAAGCCAGCAGATCAAACAAAATATTTCAAAGGTTGCTAGAGGAGCATT
CATGGCTTCCACAGAATAGTGGTTTCTGCAATCATGGAGGTGACAACATA
TGGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAAAGTAACCCTTTCCTT
CTTTCTCTGTGTCTCGTCCAACACGGATTGATGCCCCACGGTTAGCAACA
CCCCATTTGAAAGTGTTGATGTCAGCTGTTTCATGTTTGCCAGTGAGTCG
GCGTTCATTGCCTTCACCATATGCGGCAATGTGCTCACTGTGCCTCAGTC
CAAGTTTCTCAATTGCTTTCTTAATAACCTCAAAGCCTCCATCGTTCCTC
ATCGACTTGGTGCTGTAATTTGCGTGAGCACCAGCTCCATTCCAGTCACC
CTGAATTGGCTTGAGATCGAAAGAAAGCACAACTCCAGCAATCTCTGTAA
TCCTCTCTAAAATATAGCGGGCAACCCACAACTGATCTCCAGCAGAAATT
CCAACAGCGGGACCAACTTGGAACTCCCACTGCCCCGGCATGACTTCTCC
ATTGATGCCACTGATGTTGATTCC
back to top