CX671456

Overview
NameCX671456
Unique NameCX671456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:709..1482. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.166e-57
Identity = 104/170 (61.18%), Postives = 128/170 (75.29%), Query Frame = -1
Query:  265 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 774
            GI ISG N EVMP QWE+QVGP +GI  GDQLWV+R+ L RITE  G  +S   KPI GDWNGAG H+N+STK+MR +GG +VI++A++KL   H+E IA YGE NE RLTG+HET  I++F WGVANRG SIR  R+T  +G GYFEDRRPASN DPY VT  + + ++
Sbjct:  186 GIQISGTNAEVMPAQWEYQVGPCLGIEMGDQLWVSRFFLARITEEFGAKVSLHPKPIAGDWNGAGLHSNFSTKAMREEGGMKVIEEALKKLEPHHAECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRAPRETAAKGYGYFEDRRPASNADPYRVTKALLQFSL 355          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 5.401e-57
Identity = 108/172 (62.79%), Postives = 127/172 (73.84%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDG-GFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI ISGIN EVMP QWEFQVGP  GI  GD LW+AR++L RI E  G+  S   KP++GDWNGAG H+NYSTK MR  G G   I+ AI+KL  +H EHIA YGE N+ RLTGKHETA + TF  GVANRGASIR+ R    +G GY EDRRPASN+DPY VT+++ ETT+L
Sbjct:  185 GIKISGINAEVMPSQWEFQVGPCTGIEMGDHLWMARFLLLRIGEEWGITPSLHPKPLKGDWNGAGCHSNYSTKDMRTPGKGMAAIEDAIKKLEKKHLEHIAVYGEDNDLRLTGKHETASMTTFSAGVANRGASIRIPRHVGAQGYGYLEDRRPASNVDPYRVTAILVETTVL 356          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 7.054e-57
Identity = 102/168 (60.71%), Postives = 124/168 (73.81%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            GINISGIN EVMP QWE+QVGP  GI  GDQLW++R++L RI E  GV +SF  KPI GDWNGAG H N STK  R +GG + I+  +EK   RH EHIA YG+ N+ RLTG+HET  I+ F +GVA+RGAS+R+ R     G GYFEDRRPAS++DPY+VT +I ET
Sbjct:  188 GINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVYGDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLVTGIITET 355          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.501e-56
Identity = 107/175 (61.14%), Postives = 125/175 (71.43%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI I G N EVMP QWEFQVGP  GI  GD LW+AR+IL R+ E  GVV + D KP+ G+WNGAG H NYST+SMR +GG + I+ AIEKLG RH  HI  Y    G+ N RRLTG+HET+ I+ F  GVANRGASIR+ R   +EG GYFEDRRPA+N DPY VT  +  TTIL
Sbjct:  187 GIKICGTNAEVMPSQWEFQVGPCEGIDMGDHLWMARFILHRVCEDFGVVATLDPKPMTGNWNGAGCHTNYSTESMRVEGGLKHIEDAIEKLGKRHDYHICVYDPRGGKDNSRRLTGQHETSSIHEFSAGVANRGASIRIPRQVGQEGYGYFEDRRPAANCDPYAVTEALVRTTIL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 1.019e-55
Identity = 106/175 (60.57%), Postives = 122/175 (69.71%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI +SG N EVMP QWEFQVGP  GIS GD LW+AR++L RI+E  G+V + D KP+ GDWNGAGAH N STK+MR DGG   I+KA+ KL   H  HI AY    G+ N RRLTGKHET+ IN F  GVANRG SIR+ R    +GKGYFEDRRP+SN DPY V   I  T  L
Sbjct:  193 GIKVSGTNAEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMPGDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQDNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSSNCDPYSVVEAILRTICL 367          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 3.871e-55
Identity = 105/175 (60.00%), Postives = 126/175 (72.00%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI+ +G N EVMP QWEFQ+GPA GI A D LWV+RYIL+RI E  GVV++FD KP++G WNGAGAH N+STK MR DGG + I++AIEKL  RH  HI AY    G+ NERRL G+ ET+ I+ F WGVANR  S+RV R     GKGY EDRRP+SN DPY V + I  T +L
Sbjct:  224 GIDFAGTNAEVMPAQWEFQIGPA-GIKACDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRADGGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSWGVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLL 397          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.602e-55
Identity = 101/167 (60.48%), Postives = 125/167 (74.85%), Query Frame = -1
Query:  274 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE 774
            GI ISG N EVMP QWE+QVGP  GI+ GDQLW++R+ L R+ E  G  +S   KPI GDWNG G H+N+STK+MR +GG +VI++A++KL   H E IA YGE NE RLTG+HET  I++F WGVANRG SIRV R+T  +G GYFEDRRPASN DPY VT ++ +
Sbjct:  184 GIQISGTNAEVMPAQWEYQVGPCTGIAMGDQLWISRFFLHRVAEEFGAKVSLHPKPIAGDWNG-GLHSNFSTKAMREEGGMKVIEEALKKLEPHHVECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRVPRETAAKGYGYFEDRRPASNADPYRVTKVLLQ 349          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.602e-55
Identity = 104/175 (59.43%), Postives = 124/175 (70.86%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            G+ I G N EVMP QWEFQVGP  GI  GD LW+AR+IL R+ E  GV++SFD KPI G+WNGAG H N+STK+MR DGG + I++AIEKL  RH  HI AY    G  N RRLTG HET+ I+ F  GVANRGASIR+ R+   E KGYFEDR P++N DPY VT  +  T +L
Sbjct:  187 GVKIGGTNAEVMPAQWEFQVGPCEGIEMGDHLWIARFILHRVCEDFGVIVSFDPKPIPGNWNGAGCHTNFSTKNMREDGGLKHIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSSIHEFSAGVANRGASIRIPRNVGHEKKGYFEDRGPSANCDPYAVTEALVRTCLL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            G+ I+G N EVMP QWEFQ+GP  GI  GD LW+AR+IL R+ E  GV+ +FD KPI G+WNGAG H N+STK+MR + G + I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  187 GVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWIARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.471e-54
Identity = 101/175 (57.71%), Postives = 125/175 (71.43%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI +SG N EVM  QWE+QVGP  GI  GD LW++R+IL R+ E  G++ SFD KPI G+WNGAG H N+STK+MR+DGG + I+ +IEKLG RH  HI AY    G  N R LTG HET++IN F  GVANRGASIR+ R   ++ KGYFEDRRP++N DPY VT  +  T +L
Sbjct:  216 GIELSGTNAEVMAAQWEYQVGPCEGIQMGDHLWISRFILHRVCEDFGIIASFDPKPIPGNWNGAGCHTNFSTKAMRDDGGLKYIEDSIEKLGKRHQYHIRAYDPKGGLDNARALTGHHETSNINEFSAGVANRGASIRIPRSVGQDKKGYFEDRRPSANCDPYAVTEALVRTCLL 390          
The following BLAST results are available for this feature:
BLAST of CX671456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_FUSSH3.166e-5761.18Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_CRYNE5.401e-5762.79Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_SCHPO7.054e-5760.71Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_XENLA3.501e-5661.14Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA2_DROME1.019e-5560.57Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA1_DROME3.871e-5560.00Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_GIBFU6.602e-5560.48Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_CHICK6.602e-5559.43Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_MOUSE1.126e-5458.29Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_SQUAC1.471e-5457.71Glutamine synthetase, mitochondrial OS=Squalus aca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B08-D15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671456 ID=CX671456; Name=CX671456; organism=Citrus sinensis; type=EST; length=774bp
TTTTGAACAAAAGGAATTGACCCTTCCATAATGTTATTAAATTAAATGTT
TACATTATTCAACCCAATAGGACAGCAGGAAGCAACGAACCCACTGTTGC
AAATACAGGGGCAGAGATTGAAACAAGACAAAAGCTGAACTACTACTAAT
AAAGCATCCTTAGCAGAACACAATTCTGTCGTGAACTCGTGAATCCTGAG
TAAAGCCAGCAGATCAAACAAAATATTTCAAAGGTTGCTAGAGGAGCATT
CATGGCTTCCACAGAATAGTGGTTTCTGCAATCATGGAGGTGACAACATA
TGGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAAAGTAACCCTTTCCTT
CTTTCTCTGTGTCTCGTCCAACACGGATTGATGCCCCACGGTTAGCAACA
CCCCATTTGAAAGTGTTGATGTCAGCTGTTTCATGTTTGCCAGTGAGTCG
GCGTTCATTGCCTTCACCATATGCGGCAATGTGCTCACTGTGCCTCAGTC
CAAGTTTCTCAATTGCTTTCTTAATAACCTCAAAGCCTCCATCGTTCCTC
ATCGACTTGGTGCTGTAATTTGCGTGAGCACCAGCTCCATTCCAGTCACC
CTGAATTGGCTTGAGATCGAAAGAAAGCACAACTCCAGCAATCTCTGTAA
TCCTCTCTAAAATATAGCGGGCAACCCACAACTGATCTCCAGCAGAAATT
CCAACAGCGGGACCAACTTGGAACTCCCACTGCCCCGGCATGACTTCTCC
ATTGATGCCACTGATGTTGATTCC
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