CX671456

Overview
NameCX671456
Unique NameCX671456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 212.616 bits (540), Expect = 1.921e-54
Identity = 103/175 (58.86%), Postives = 124/175 (70.86%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI I G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FD KPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  187 GIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.921e-54
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            G+ I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FD KPI G+WNGAG H N+STK+MR + G + I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E +GYFEDRRP++N DPY VT  I  T +L
Sbjct:  187 GVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKRGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 3.277e-54
Identity = 103/175 (58.86%), Postives = 124/175 (70.86%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI I G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FD KPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  187 GIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNTRRLTGFHETSNINDFSAGVANRGASIRIPRTGGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 5.589e-54
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            G+ I+G N EVMP QWEFQ+GP  GIS GD LWVAR+IL R+ E  GV+ +FD KPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVANR ASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  188 GVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 362          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 211.075 bits (536), Expect = 5.589e-54
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            G+ I+G N EVMP QWEFQ+GP  GIS GD LWVAR+IL R+ E  GV+ +FD KPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVANR ASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  187 GVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 5.589e-54
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FD KPI G+WNGAG H N+STK+MR + G + I+++IEKL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  187 GIKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 7.300e-54
Identity = 103/175 (58.86%), Postives = 123/175 (70.29%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GI I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FD KPI G+WNGAG H N+STK+MR + G   I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F  GVANR ASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  187 GIKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLRCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRIVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.798e-52
Identity = 96/168 (57.14%), Postives = 124/168 (73.81%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            GI ISG N EV PGQ EFQ+GP  GI A DQLW+AR+ILE+I+E     + +  KP+QGDWNG+G H N+ST+SMR++GG  VI +A++KL  +HSEH+  YG  N+ RLTG HETA I+ F  G+ +R  S+R+  DT K G GYFEDRRPA+N+DPY VTS+I +T
Sbjct:  181 GIKISGTNLEVAPGQHEFQIGPVEGIDAADQLWIARFILEKISEHYDRYIVYHPKPLQGDWNGSGCHTNFSTESMRSEGGLTVIMEAVDKLRTKHSEHMKVYGIDNDLRLTGDHETASIDEFSHGIGSRQCSVRIPNDTVKNGYGYFEDRRPAANIDPYQVTSIILQT 348          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.348e-52
Identity = 96/171 (56.14%), Postives = 128/171 (74.85%), Query Frame = -1
Query:  265 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQ-GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 774
            G+ ISGIN EVMPGQWE+Q+GP   ++ GD++ ++R++L R+ E  G+V +F+ KP++ GDWNG GAH N+STK MR  GG +VI++A+EKL   H EHI  YG GNE RLTGKHET DINTFK GVA+RG+SIR+      +G GY EDRRPA+N+DPY V  ++ +T +
Sbjct:  208 GLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTNFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVADRGSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVL 378          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.596e-51
Identity = 100/175 (57.14%), Postives = 122/175 (69.71%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            GINISG N +VMP QWEFQVGP  GI+ GD LW+ARY+L R+ E   VV++ D KPI GDWNGAG H N+ST++MR   G   I+ AI+KL   H +HI AY    G+ NERRLTG +ET+ I+ F  GVANRGASIR+ R   +E  GY EDRRP+SN DPYVV+  +  T  L
Sbjct:  184 GINISGENAKVMPAQWEFQVGPCEGITMGDDLWMARYLLHRVAEDFDVVVTLDPKPIPGDWNGAGMHTNFSTEAMRGPNGILEIESAIDKLSKVHEKHIKAYDPHAGKDNERRLTGHYETSSIHDFSAGVANRGASIRIPRGVAEEKTGYLEDRRPSSNADPYVVSERLVRTICL 358          
The following BLAST results are available for this feature:
BLAST of CX671456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_BOVIN1.921e-5458.86Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_ACOCA1.921e-5458.29Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_PIG3.277e-5458.86Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_MACFA5.589e-5458.29Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_HUMAN5.589e-5458.29Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_CANFA5.589e-5458.29Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_RAT7.300e-5458.86Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_MIMIV1.798e-5257.14Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA2_CHLRE2.348e-5256.14Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA_PANAR2.596e-5157.14Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B08-D15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671456 ID=CX671456; Name=CX671456; organism=Citrus sinensis; type=EST; length=774bp
TTTTGAACAAAAGGAATTGACCCTTCCATAATGTTATTAAATTAAATGTT
TACATTATTCAACCCAATAGGACAGCAGGAAGCAACGAACCCACTGTTGC
AAATACAGGGGCAGAGATTGAAACAAGACAAAAGCTGAACTACTACTAAT
AAAGCATCCTTAGCAGAACACAATTCTGTCGTGAACTCGTGAATCCTGAG
TAAAGCCAGCAGATCAAACAAAATATTTCAAAGGTTGCTAGAGGAGCATT
CATGGCTTCCACAGAATAGTGGTTTCTGCAATCATGGAGGTGACAACATA
TGGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAAAGTAACCCTTTCCTT
CTTTCTCTGTGTCTCGTCCAACACGGATTGATGCCCCACGGTTAGCAACA
CCCCATTTGAAAGTGTTGATGTCAGCTGTTTCATGTTTGCCAGTGAGTCG
GCGTTCATTGCCTTCACCATATGCGGCAATGTGCTCACTGTGCCTCAGTC
CAAGTTTCTCAATTGCTTTCTTAATAACCTCAAAGCCTCCATCGTTCCTC
ATCGACTTGGTGCTGTAATTTGCGTGAGCACCAGCTCCATTCCAGTCACC
CTGAATTGGCTTGAGATCGAAAGAAAGCACAACTCCAGCAATCTCTGTAA
TCCTCTCTAAAATATAGCGGGCAACCCACAACTGATCTCCAGCAGAAATT
CCAACAGCGGGACCAACTTGGAACTCCCACTGCCCCGGCATGACTTCTCC
ATTGATGCCACTGATGTTGATTCC
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