CX671456

Overview
NameCX671456
Unique NameCX671456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.414e-49
Identity = 97/176 (55.11%), Postives = 116/176 (65.91%), Query Frame = -1
Query:  265 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKP--IQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 774
            G+NI G N EV PGQWEFQ+G   GI  GDQLW++RYIL R+ E  GV +S D KP    GDWNGAG H N+ST  MR  GG   I+ A+  L   H E +  Y    GE N RRLTG+HET+  + F WGVANRG SIR+ R    E KGY EDRRP+SN DPY VT+MIA++ +
Sbjct:  191 GLNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVYDPHGGEDNLRRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSSNCDPYQVTAMIAQSIL 366          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 191.815 bits (486), Expect = 3.509e-48
Identity = 95/175 (54.29%), Postives = 119/175 (68.00%), Query Frame = -1
Query:  262 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 774
            G+ I+G   EV   QWEFQ+GP  GI  GD LWVAR+IL R+ +  GV+ +FD KPI G+WNGAG H N+STK+MR + G + IK+AIEKL  RH  HI AY    G  N RRLTG H+T++IN F  GVA+R ASIR+ R   +E KGYFE R P++N DP+ VT  I  T +L
Sbjct:  187 GVKITGTYAEVKHAQWEFQIGPCEGIRMGDHLWVARFILHRVCKDFGVIATFDSKPIPGNWNGAGCHTNFSTKTMREENGLKHIKEAIEKLSKRHRYHIRAYDPKGGLDNARRLTGFHKTSNINDFSAGVADRSASIRIPRTVGQEKKGYFEARCPSANCDPFAVTEAIVRTCLL 361          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.618e-47
Identity = 91/170 (53.53%), Postives = 118/170 (69.41%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL--GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G+ ISGIN EVMPGQWEFQVGP   +   D LWVAR++L R  E   V  + D KP++GDWNGAGAH N+STK+MR    ++ I  A E L  G +  +H+  YG G + RLTG HETA  N + +GV++RGAS+R+    EK+GKGY EDRRP +N+DPYVVT ++ +T
Sbjct:  165 GLAISGINAEVMPGQWEFQVGPVSPLEVSDHLWVARWLLYRTAEDFDVAATLDPKPVKGDWNGAGAHTNFSTKAMRE--SYDAIITAAESLGEGSKPLDHVKNYGAGIDDRLTGLHETAPWNEYSYGVSDRGASVRIPWQVEKDGKGYIEDRRPNANVDPYVVTRLLVDT 332          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.925e-46
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G+ I G N EVM GQWEFQ+G     + GDQ+W+ R++L RI E  GV +SF  KPI GDWNGAGAH N+STK      G++ I    E LG R +EH+  YG+G E RLTGKHETA  N + WG ++RGAS+R+    EK  KG+ EDRRP +NMDPY+VT+++ +T
Sbjct:  160 GLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAGAHTNFSTKQTME--GWDAIVTCCEALGTRVTEHVTHYGKGIEDRLTGKHETAPWNKYSWGASDRGASVRIPWAVEKAKKGWLEDRRPNANMDPYLVTALMIDT 325          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.556e-46
Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGL--RHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 774
            G+ +SGIN EVMPGQWEFQVG    +   D +WVAR++L R+ E  GV  S D KP +GDWNGAGAH N+ST++MR   G++ I  A E LG   +  EH+  YG G E RLTG HETA  + + +G ++RGAS+R+    E E KGY EDRRP +N+DPYVVT ++ +T
Sbjct:  162 GLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAGAHTNFSTRAMRE--GYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETAPWDAYSYGASDRGASVRIPWQVEVEKKGYIEDRRPNANVDPYVVTRLMVDT 329          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.594e-40
Identity = 85/170 (50.00%), Postives = 107/170 (62.94%), Query Frame = -1
Query:  271 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPI-QGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEG-KGYFEDRRPASNMDPYVVTSMIAET 774
            GIN  GIN EV  GQWEFQ+       A D++W+ARY++ R+TE  G+ + F  KP+   DWNG+G HAN+ST+ MR  GG E  +  +        +HIA YG  N++RLTGKHETA  N F +GVA+RGASIRV       G KGY EDRRP S  DPY + S I +T
Sbjct:  163 GINHEGINAEVAKGQWEFQIFGKGSKKAADEMWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSGMHANFSTEYMRTVGGKEYFEALMAAFDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFVNNGYKGYLEDRRPNSQGDPYQIASQILKT 332          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.478e-38
Identity = 81/163 (49.69%), Postives = 104/163 (63.80%), Query Frame = -1
Query:  292 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPI-QGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPYVV 774
            GIN  GIN EV  GQWEFQ+       A DQ+W+ARY+L+R+TE  G+ + +  KP+   DWNG+G H N+STK +R  GG E  +  +        +HIA YG  N++RLTGKHETA  N F +GVA+RGASIRV     + + KGY EDRRP S  DPY +
Sbjct:  160 GINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSGMHCNFSTKYLREVGGKEYFEALMASSDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFIKNDYKGYLEDRRPNSQGDPYQI 322          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.212e-32
Identity = 81/164 (49.39%), Postives = 97/164 (59.15%), Query Frame = -1
Query:  298 GINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDLKPI-QGDWNGAGAHANYSTKSMRNDGG---FEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPY 774
            GIN  GIN EV  GQWEFQ+       A D++ VARY+L R+TE  G+ + F  KP+   DWNG+G HAN+ST  +R  GG   FE +  A EK      +HI  YG  N  RLTGKHETA  + F +GVA+RGASIRV          GY EDRR  S  DPY
Sbjct:  163 GINHEGINAEVAKGQWEFQIFGKGSKKAADEVCVARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSGMHANFSTAYLREVGGQDYFEALMAAFEK---NLHDHINVYGPDNHLRLTGKHETAPWDKFSYGVADRGASIRVPHSFVNNAYPGYLEDRRANSQGDPY 323          
BLAST of CX671456 vs. ExPASy Swiss-Prot
Match: GLNA_VITSX (Glutamine synthetase (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12
Identity = 38/54 (70.37%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  388 RNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANR 549
            +NDGGFEVIKK        H EHIAAYGEGNER     HETADINTF WGVANR
Sbjct:   11 KNDGGFEVIKK--------HKEHIAAYGEGNER-----HETADINTFLWGVANR 51          
The following BLAST results are available for this feature:
BLAST of CX671456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_CAEEL5.414e-4955.11Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_CRIGR3.509e-4854.29Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA2_STRVR6.618e-4753.53Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_FRAAL1.925e-4652.98Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_STRHY9.556e-4652.35Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_BRAJA4.594e-4050.00Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHILP1.478e-3849.69Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_RHIME1.212e-3249.39Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]
GLNA_VITSX3.103e-1270.37Glutamine synthetase (Fragments) OS=Vitis sp. PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B08-D15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671456 ID=CX671456; Name=CX671456; organism=Citrus sinensis; type=EST; length=774bp
TTTTGAACAAAAGGAATTGACCCTTCCATAATGTTATTAAATTAAATGTT
TACATTATTCAACCCAATAGGACAGCAGGAAGCAACGAACCCACTGTTGC
AAATACAGGGGCAGAGATTGAAACAAGACAAAAGCTGAACTACTACTAAT
AAAGCATCCTTAGCAGAACACAATTCTGTCGTGAACTCGTGAATCCTGAG
TAAAGCCAGCAGATCAAACAAAATATTTCAAAGGTTGCTAGAGGAGCATT
CATGGCTTCCACAGAATAGTGGTTTCTGCAATCATGGAGGTGACAACATA
TGGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAAAGTAACCCTTTCCTT
CTTTCTCTGTGTCTCGTCCAACACGGATTGATGCCCCACGGTTAGCAACA
CCCCATTTGAAAGTGTTGATGTCAGCTGTTTCATGTTTGCCAGTGAGTCG
GCGTTCATTGCCTTCACCATATGCGGCAATGTGCTCACTGTGCCTCAGTC
CAAGTTTCTCAATTGCTTTCTTAATAACCTCAAAGCCTCCATCGTTCCTC
ATCGACTTGGTGCTGTAATTTGCGTGAGCACCAGCTCCATTCCAGTCACC
CTGAATTGGCTTGAGATCGAAAGAAAGCACAACTCCAGCAATCTCTGTAA
TCCTCTCTAAAATATAGCGGGCAACCCACAACTGATCTCCAGCAGAAATT
CCAACAGCGGGACCAACTTGGAACTCCCACTGCCCCGGCATGACTTCTCC
ATTGATGCCACTGATGTTGATTCC
back to top