CX671452

Overview
NameCX671452
Unique NameCX671452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_STREM (50S ribosomal protein L15 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplO PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.099e-22
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L+ L P  GS         G ++G G + G G +GQK+RSG GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKPAKGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_STRE4 (50S ribosomal protein L15 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplO PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.099e-22
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L+ L P  GS         G ++G G + G G +GQK+RSG GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKPAKGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_FINM2 (50S ribosomal protein L15 OS=Finegoldia magna (strain ATCC 29328) GN=rplO PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.354e-22
Identity = 64/156 (41.03%), Postives = 92/156 (58.97%), Query Frame = -1
Query:  377 RLNNLGP-QPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L+NL P + G          G  +G G++ G G  GQ SRSG GVR GFEGGQMPL+RR+PK     G  +    +Y  +N++D+    F +G+E++ E L   G   P+  + K  +KILGDGE++KKL  KA  F+ SA+EK+  AG  + V+
Sbjct:    2 KLHNLRPAKGGEVKARKRVGRGYGSGLGHNAGRGRDGQNSRSGGGVRPGFEGGQMPLFRRLPK----RGFKNHFAKQYAEINIRDLNC--FEDGEEITPEILANAGFFKPA--KAKDGVKILGDGEITKKLTIKANKFTKSAEEKITKAGGKVEVI 149          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_STRGC (50S ribosomal protein L15 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplO PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 64/155 (41.29%), Postives = 91/155 (58.71%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L+ L P  GS         G ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G ++    +Y  VNL  + A  F +G EV+   L + G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELQPAAGSRKVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFLNVNRKEYAIVNLDQLNA--FEDGAEVTPVVLVESGIV----KAEKSGVKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_MACCJ (50S ribosomal protein L15 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplO PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 63/155 (40.65%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L+ + P  G+         G+A+G G + G G +GQK+RSG GVR GFEGGQ+PL+RR+PK     G  +     Y  VNL  +    F +G E++  +L + G+++      K  +K+LG+GELSKKL  KA  FS SAKE +E  G T  V+
Sbjct:    2 KLHEMKPVEGARKERNRVGRGMASGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRLPK----RGFTNINRKDYAIVNLDQLNR--FEDGTEITPASLIETGVVS----NEKSGIKVLGNGELSKKLTVKAHKFSASAKEAIEGKGGTTEVI 146          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_CLOTH (50S ribosomal protein L15 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplO PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 68/155 (43.87%), Postives = 88/155 (56.77%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L  L P PGS         G   G G + G G +GQ +RSG GVR GFEGGQMPLYRR+PK     G  +     Y  VN+  + A  F +G  V+ E LK+KG+I    ++    + ILG+GEL KKL  KA  FS +A EK+EAAG  + V+
Sbjct:    2 KLFELQPAPGSKKLPKRKGRGHGTGNGKTAGRGHKGQNARSGGGVRPGFEGGQMPLYRRVPK----RGFTNIFSKVYTEVNVSALNA--FDDGTVVTQELLKEKGII----KKINDGVVILGNGELKKKLTVKAARFSKTAAEKIEAAGGKVEVI 146          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_LISW6 (50S ribosomal protein L15 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplO PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.193e-21
Identity = 65/149 (43.62%), Postives = 85/149 (57.05%), Query Frame = -1
Query:  395 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 841
            +L+ L P  GS         G  +G G + G G +GQK+RSG GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL DG + KKL  KA  FS +AKE +EAAG
Sbjct:    2 KLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLIESGII----RNEKSGIKILSDGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_LISIN (50S ribosomal protein L15 OS=Listeria innocua GN=rplO PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21
Identity = 65/149 (43.62%), Postives = 85/149 (57.05%), Query Frame = -1
Query:  395 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 841
            +L+ L P  GS         G  +G G + G G +GQK+RSG GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL DG + KKL  KA  FS +AKE +EAAG
Sbjct:    2 KLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLIETGII----RNEKSGIKILSDGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_STRT2 (50S ribosomal protein L15 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplO PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.034e-21
Identity = 63/155 (40.65%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L+ L P  GS         G ++G G + G G +GQK+RSG G+R GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+   LK+ G+I    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGVGLRPGFEGGQTPLFRRLPK----RGFTNINAKEYTLVNLEQLNV--FEDGTEVTPVVLKEAGII----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_STRT1 (50S ribosomal protein L15 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplO PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.034e-21
Identity = 63/155 (40.65%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L+ L P  GS         G ++G G + G G +GQK+RSG G+R GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+   LK+ G+I    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGVGLRPGFEGGQTPLFRRLPK----RGFTNINAKEYTLVNLEQLNV--FEDGTEVTPVVLKEAGII----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
The following BLAST results are available for this feature:
BLAST of CX671452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_STREM4.099e-2242.5850S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_STRE44.099e-2242.5850S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_FINM25.354e-2241.0350S ribosomal protein L15 OS=Finegoldia magna (str... [more]
RL15_STRGC9.132e-2241.2950S ribosomal protein L15 OS=Streptococcus gordoni... [more]
RL15_MACCJ9.132e-2240.6550S ribosomal protein L15 OS=Macrococcus caseolyti... [more]
RL15_CLOTH9.132e-2243.8750S ribosomal protein L15 OS=Clostridium thermocel... [more]
RL15_LISW61.193e-2143.6250S ribosomal protein L15 OS=Listeria welshimeri s... [more]
RL15_LISIN1.558e-2143.6250S ribosomal protein L15 OS=Listeria innocua GN=r... [more]
RL15_STRT22.034e-2140.6550S ribosomal protein L15 OS=Streptococcus thermop... [more]
RL15_STRT12.034e-2140.6550S ribosomal protein L15 OS=Streptococcus thermop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11B06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B06-D11-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671452 ID=CX671452; Name=CX671452; organism=Citrus sinensis; type=EST; length=883bp
TTTTTTTTCATCAAATGGTGATCTAATCAACATAATAACTGAGATTTGGC
TTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTAGCTGAATT
TTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAATTACAGCT
ATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAACCAGAGAA
AAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTGAGTGAAAA
AAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGCAGCAGCTC
TCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAGCTACTGAT
GGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTACAGCCTGC
AGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGCCTTGAAGT
TCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAGGCAGTTTC
CTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAAGTCTCTAG
TGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTCTTTCAAGT
TAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGGCAATCCCA
CGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCTTCAAAACC
CTTTCTAACGCCAGGACCAGACCTCGATTTCTGACCTCTCATTCCAAACC
CACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCTTTCTCTTCCCT
CTCTTTCTCGAACCCGGTTGTGGGCCCAGGTTATTTAACCGGAACCGTAC
ATTCGTAACGGGACCCGAACCAACAGTTGCTGA
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