CX671447

Overview
NameCX671447
Unique NameCX671447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:893..1677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671447 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.604e-80
Identity = 146/183 (79.78%), Postives = 159/183 (86.89%), Query Frame = -1
Query:  238 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 786
            LMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW         G  L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct:  258 LMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of CX671447 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.736e-80
Identity = 145/182 (79.67%), Postives = 159/182 (87.36%), Query Frame = -1
Query:  241 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 786
            LMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW         G  L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct:  258 LMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of CX671447 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.040e-79
Identity = 146/183 (79.78%), Postives = 160/183 (87.43%), Query Frame = -1
Query:  238 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 786
            LMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVRKW         GK LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG ANEDAI+SG+F+
Sbjct:  258 LMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of CX671447 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.774e-79
Identity = 143/180 (79.44%), Postives = 159/180 (88.33%), Query Frame = -1
Query:  247 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSG 786
            LMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW         G+ L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +G
Sbjct:  253 LMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of CX671447 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.042e-71
Identity = 131/159 (82.39%), Postives = 142/159 (89.31%), Query Frame = -1
Query:  310 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 786
            LMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW         G++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  251 LMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
BLAST of CX671447 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.251e-57
Identity = 112/169 (66.27%), Postives = 128/169 (75.74%), Query Frame = -1
Query:  280 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 786
            LMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR+W         G+ LVN+++      +  M +  L++YG  +V EQENVKRVQLAD YLS A L
Sbjct:  227 LMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of CX671447 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.209e-47
Identity = 91/163 (55.83%), Postives = 116/163 (71.17%), Query Frame = -1
Query:  298 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 786
            LMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R +            +VNS EA P F++P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  127 LMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
BLAST of CX671447 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.885e-47
Identity = 89/163 (54.60%), Postives = 115/163 (70.55%), Query Frame = -1
Query:  298 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 786
            LMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R +            +VNS E  P F++P  T+  L+E  N +V EQ+ ++  QL D+Y
Sbjct:  127 LMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289          
BLAST of CX671447 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 45/73 (61.64%), Postives = 45/73 (61.64%), Query Frame = -1
Query:  499 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 717
            RVPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   95 RVPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
The following BLAST results are available for this feature:
BLAST of CX671447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_TOBAC1.604e-8079.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.736e-8079.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.040e-7979.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.774e-7979.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.042e-7182.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE4.251e-5766.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP5.209e-4755.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC8.885e-4754.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY4.921e-1361.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11B02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B02-D3-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671447 ID=CX671447; Name=CX671447; organism=Citrus sinensis; type=EST; length=786bp
TTTTAACACAAAATTAGAGGATTCTTTCTGATTAAAAAAGAAATGAAAAT
GCAACAATATTATTTGAATATCTCACATCCTAAGCAAAGTGCGACACTTC
TCAACCCTTAGAAACAAGGCCTAAAGCGTGTATTGGCAGCTTCCATCATC
ACTTCTTGCAGTTGGATCAAAGTTTTCTGCAGTAGGATCAGTACATCCTT
CAGGAACTGGAACATTCATTTGCTGGGCTGCTTTGCCATAGAAATTTCCA
CTCTGAATAGCATCTTCATTAGCTTCACCAAGAGCGGCCTCACTCAAATA
CTTGTCAGCCAACTGAACTCTCTTCACATTCTCTTGCTCTTGCACAATCA
TGTTTCCGTACTCGAGCAGCTTCTCCATTGTCATCCTTGGTTGCTCGAAT
GTTGGGGCTGCTTCCTTTGAGTTCACAAGGCTCTTGCCAATGCTTCCAAC
ACCAACACCAGAGATCCACTTCCTCACCTCATCATCATAGACTCTGGCCC
TCAGGGCTCCAAAGAAATCAATGGATTGGCCGGGGAAGGTGTCGACAAGC
TTGACAATGTCGTCATCAGCCACATTGTCATTCCTGAAGATACCCTTGCA
CACACCAATACGGTCCTCCCTTGTAGGTGCCCAGTAGAATTTCTCCATAC
GACCATCACGGATGAGAGGAGCATACAATGTTGAGAAGTCATTACCGGTG
ACTATGATTGGGACACGGGGGTTCTCCTCCTTGTTGTACATACCAGGGAG
TTGGACACAAGTTGGGTTATCAGCAATGTTCATGAG
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