CX671444

Overview
NameCX671444
Unique NameCX671444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10679 contig Csv1_Contig10679:178..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_RAT (ATP synthase subunit delta, mitochondrial OS=Rattus norvegicus GN=Atp5d PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = -3
Query:  182 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 589
            P + P +++  F  P         V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A E V +D +D    +  L +   +LS A  +  +AE  I ++ + AL  AL
Sbjct:   31 PAAGPGQMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTKYFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIRIEANEALVKAL 167          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_HUMAN (ATP synthase subunit delta, mitochondrial OS=Homo sapiens GN=ATP5D PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = -3
Query:  182 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 577
            P++++  F  P     +   V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L     +  +AE  I ++ + AL  AL
Sbjct:   35 PNQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKAL 167          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_NEUCR (ATP synthase subunit delta, mitochondrial OS=Neurospora crassa GN=atp-16 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 43/135 (31.85%), Postives = 77/135 (57.04%), Query Frame = -3
Query:  182 SIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 583
            ++  K+ ++  LP+ +   +++V  V +PA +G+MGVL  HVP+I +LKPG++ V  +    K+YF+S GFA +   S   I AVE   ++      V+  +AE  + +S   +  + AEA + ++V  +L + L
Sbjct:   30 AVADKIKLSLSLPHQAIYKSQDVVQVNIPAVSGEMGVLANHVPSIEQLKPGLVEVIEESGSNKQYFLSGGFAVVQPGSKLSINAVEGYALEDFSAEAVRAQIAEAQKIVSGGGSQQDIAEAQVELEVLESLQAVL 164          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_CAEEL (ATP synthase subunit delta, mitochondrial OS=Caenorhabditis elegans GN=F58F12.1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.646e-13
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = -3
Query:  179 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSALT 577
            P +L + F  P  +  S   V  V VP   G +GVL  HVPTI  LKPGV+SV     T ++ FVSSG   ++ +    ++A E + +++ID S  +  L +  Q+ S   +++ +AEA I  +V  AL  A T
Sbjct:   28 PEELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQRLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAEL-DAAQRASGEGSEVARAEAQIRAEVAEALIKAAT 160          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_SCHPO (ATP synthase subunit delta, mitochondrial OS=Schizosaccharomyces pombe GN=atp16 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = -3
Query:  182 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTK-KYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 571
            KL ++  LPY +      V  V +PA  G+MG+L  HVP I  LKPGV+SV D +  K KYF+S GFA    ++   I   EA  ++    S+  + L +   +++S+   +  AEA + V V  +L  AL
Sbjct:   30 KLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGVISVTDESSNKSKYFISGGFAVQQPSNELSITVPEAYKLEDFSSSVANQLLEKHKAEMNSSDEGV-AAEAAVRVSVLESLVRAL 159          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_OLTVI (ATP synthase epsilon chain, chloroplastic OS=Oltmannsiellopsis viridis GN=atpE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = -3
Query:  224 KEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 523
            KEVD +I+P +TGQMGVL  H P I  L  GV+ V    D +   V  GFA +  N +  ++  EA   + IDP   ++  A   Q L  AT   EK EA
Sbjct:   17 KEVDEIILPTNTGQMGVLSNHAPLITALDIGVMLVRTQKDWESVAVMGGFALVKQNQIT-VLVNEAESKETIDPQEAEEAFATAKQTLEQATGQKEKVEA 115          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_MAGSA (ATP synthase epsilon chain OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = -3
Query:  224 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGND-TKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 571
            K+    V P A  L + +VDMV+VP + G  G L  H P I  ++PGV+ +HDG   +   FV+ GFA ++   +  ++A EA+P+ ++   + +       + L  A +D +KA A
Sbjct:    4 KIQFELVSP-AKLLVSSKVDMVVVPGAEGDFGALALHAPMITTVRPGVIDIHDGGKVSSSVFVAGGFAEVNEERIT-VLAEEAIPVGELTAEMAEARKKAAKEALDDAKSDRDKAHA 118          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_RHOCS (ATP synthase epsilon chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  233 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT---KKYFVSSGFAFIHANSVADIIAVEAVPIDQI---DPSLVQKGLAEFNQKLSSATTDLEK 532
            L ++ V MV+VP + G  GVLPGH P I  ++PG++ V+  N T   ++ FV+ GFA +  ++   ++A EA  +D +   D + ++K +++  + +  AT+D+E+
Sbjct:   16 LVSQPVAMVVVPGADGLFGVLPGHAPMIVTVRPGIIDVYGDNQTTVSRRIFVAGGFAEV-TDTRCTVLAEEASDLDALLKSDTAALEKQISDLREDIEDATSDVER 120          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_RHORU (ATP synthase epsilon chain OS=Rhodospirillum rubrum GN=atpC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 38/120 (31.67%), Postives = 66/120 (55.00%), Query Frame = -3
Query:  176 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSALTG 532
            L ++ V+MV+VP + G  G +P H P ++ ++PGV+S ++G    ++ FV+ GFA +       ++A EA  +  +    V+  L   + +L  AT++ EKAEA     +  AL +A  G
Sbjct:   16 LFSEPVEMVVVPGTDGDFGAMPRHAPLLSTVRPGVISTYNGGKVQRRIFVAGGFAEV-TEDRCTVLADEAFDLASLSEEAVRARLQAADDRLKEATSEAEKAEAAQAKAIAEALLAARKG 134          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_RHORT (ATP synthase epsilon chain OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 38/120 (31.67%), Postives = 66/120 (55.00%), Query Frame = -3
Query:  176 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSALTG 532
            L ++ V+MV+VP + G  G +P H P ++ ++PGV+S ++G    ++ FV+ GFA +       ++A EA  +  +    V+  L   + +L  AT++ EKAEA     +  AL +A  G
Sbjct:   16 LFSEPVEMVVVPGTDGDFGAMPRHAPLLSTVRPGVISTYNGGKVQRRIFVAGGFAEV-TEDRCTVLADEAFDLASLSEEAVRARLQAADDRLKEATSEAEKAEAAQAKAIAEALLAARKG 134          
The following BLAST results are available for this feature:
BLAST of CX671444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ATPD_RAT6.009e-1634.31ATP synthase subunit delta, mitochondrial OS=Rattu... [more]
ATPD_HUMAN8.677e-1533.83ATP synthase subunit delta, mitochondrial OS=Homo ... [more]
ATPD_NEUCR1.133e-1431.85ATP synthase subunit delta, mitochondrial OS=Neuro... [more]
ATPD_CAEEL3.646e-1335.82ATP synthase subunit delta, mitochondrial OS=Caeno... [more]
ATPD_SCHPO1.061e-1235.88ATP synthase subunit delta, mitochondrial OS=Schiz... [more]
ATPE_OLTVI8.980e-1240.00ATP synthase epsilon chain, chloroplastic OS=Oltma... [more]
ATPE_MAGSA1.173e-1132.48ATP synthase epsilon chain OS=Magnetospirillum mag... [more]
ATPE_RHOCS4.457e-1133.02ATP synthase epsilon chain OS=Rhodospirillum cente... [more]
ATPE_RHORU9.928e-1131.67ATP synthase epsilon chain OS=Rhodospirillum rubru... [more]
ATPE_RHORT9.928e-1131.67ATP synthase epsilon chain OS=Rhodospirillum rubru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11B01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B01-D1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671444 ID=CX671444; Name=CX671444; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTTTTTCCTTGTTCTCATAATTTATTTTAAGCCTCTGAG
AAAAAACAGTAAAATTATGTTCGACAAATCTTAGTGACTTGCTGATTACA
TGGAGGATGGAAAACCACAATGCAACTCAAAAATAGAAAGCAAAATGAGA
AAAATTTGGAGGTAGAAGAAAATTAGCCTGTGAGAGCAGAGTTGAGTGCA
CTGTGAACATCAACACCTATCTAAGCTTCAGCTTTCTCCAGGTCAGTTGT
AGCTGAACTAAGCTTCTGGTTGAACTCTGCAAGGCCCTTCTGGACCAAGC
TGGGGTCAATTTGGTCGATTGGCACAGCCTCAACAGCGATTATGTCTGCA
ACAGAGTTTGCATGGATAAATGCAAACCCACTGCTAACAAAGTATTTCTT
GGTATCATTACCATCATGAACCGATAAGACTCCAGGCTTTAGTTCTGCAA
TTGTAGGTACATGTCCAGGCAGAACACCCATTTGCCCAGTTGATGCTGGA
ACTATAACCATATCGACCTCCTTAGCGGAGAGCTCAGAGGCGTAGGGAAG
GACGAAGTTGACGGTGAGCTTGGAGGGGATTGAAGTGGGGGTTTGTGGGC
GAGGGGTCATGTAAACCGATGGAGTCTTTGGCGGCTCCGTGATTGGATTC
ACTTTCTTCCATGACT
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