CX671444
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_RAT (ATP synthase subunit delta, mitochondrial OS=Rattus norvegicus GN=Atp5d PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16 Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = -3 Query: 182 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 589 P + P +++ F P V V VP TG G+L HVPT+ L+PG++ VH + T KYFVSSG ++A+S ++A E V +D +D + L + +LS A + +AE I ++ + AL AL Sbjct: 31 PAAGPGQMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTKYFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIRIEANEALVKAL 167
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_HUMAN (ATP synthase subunit delta, mitochondrial OS=Homo sapiens GN=ATP5D PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15 Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = -3 Query: 182 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 577 P++++ F P + V V VP TG G+L HVPT+ L+PG++ VH + T KYFVSSG ++A+S ++A EAV +D +D + L + +L + +AE I ++ + AL AL Sbjct: 35 PNQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKAL 167
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_NEUCR (ATP synthase subunit delta, mitochondrial OS=Neurospora crassa GN=atp-16 PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14 Identity = 43/135 (31.85%), Postives = 77/135 (57.04%), Query Frame = -3 Query: 182 SIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 583 ++ K+ ++ LP+ + +++V V +PA +G+MGVL HVP+I +LKPG++ V + K+YF+S GFA + S I AVE ++ V+ +AE + +S + + AEA + ++V +L + L Sbjct: 30 AVADKIKLSLSLPHQAIYKSQDVVQVNIPAVSGEMGVLANHVPSIEQLKPGLVEVIEESGSNKQYFLSGGFAVVQPGSKLSINAVEGYALEDFSAEAVRAQIAEAQKIVSGGGSQQDIAEAQVELEVLESLQAVL 164
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_CAEEL (ATP synthase subunit delta, mitochondrial OS=Caenorhabditis elegans GN=F58F12.1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.646e-13 Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = -3 Query: 179 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSALT 577 P +L + F P + S V V VP G +GVL HVPTI LKPGV+SV T ++ FVSSG ++ + ++A E + +++ID S + L + Q+ S +++ +AEA I +V AL A T Sbjct: 28 PEELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQRLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAEL-DAAQRASGEGSEVARAEAQIRAEVAEALIKAAT 160
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_SCHPO (ATP synthase subunit delta, mitochondrial OS=Schizosaccharomyces pombe GN=atp16 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12 Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = -3 Query: 182 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTK-KYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 571 KL ++ LPY + V V +PA G+MG+L HVP I LKPGV+SV D + K KYF+S GFA ++ I EA ++ S+ + L + +++S+ + AEA + V V +L AL Sbjct: 30 KLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGVISVTDESSNKSKYFISGGFAVQQPSNELSITVPEAYKLEDFSSSVANQLLEKHKAEMNSSDEGV-AAEAAVRVSVLESLVRAL 159
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_OLTVI (ATP synthase epsilon chain, chloroplastic OS=Oltmannsiellopsis viridis GN=atpE PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12 Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = -3 Query: 224 KEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 523 KEVD +I+P +TGQMGVL H P I L GV+ V D + V GFA + N + ++ EA + IDP ++ A Q L AT EK EA Sbjct: 17 KEVDEIILPTNTGQMGVLSNHAPLITALDIGVMLVRTQKDWESVAVMGGFALVKQNQIT-VLVNEAESKETIDPQEAEEAFATAKQTLEQATGQKEKVEA 115
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_MAGSA (ATP synthase epsilon chain OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpC PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11 Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = -3 Query: 224 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGND-TKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 571 K+ V P A L + +VDMV+VP + G G L H P I ++PGV+ +HDG + FV+ GFA ++ + ++A EA+P+ ++ + + + L A +D +KA A Sbjct: 4 KIQFELVSP-AKLLVSSKVDMVVVPGAEGDFGALALHAPMITTVRPGVIDIHDGGKVSSSVFVAGGFAEVNEERIT-VLAEEAIPVGELTAEMAEARKKAAKEALDDAKSDRDKAHA 118
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_RHOCS (ATP synthase epsilon chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpC PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11 Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = -3 Query: 233 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT---KKYFVSSGFAFIHANSVADIIAVEAVPIDQI---DPSLVQKGLAEFNQKLSSATTDLEK 532 L ++ V MV+VP + G GVLPGH P I ++PG++ V+ N T ++ FV+ GFA + ++ ++A EA +D + D + ++K +++ + + AT+D+E+ Sbjct: 16 LVSQPVAMVVVPGADGLFGVLPGHAPMIVTVRPGIIDVYGDNQTTVSRRIFVAGGFAEV-TDTRCTVLAEEASDLDALLKSDTAALEKQISDLREDIEDATSDVER 120
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_RHORU (ATP synthase epsilon chain OS=Rhodospirillum rubrum GN=atpC PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11 Identity = 38/120 (31.67%), Postives = 66/120 (55.00%), Query Frame = -3 Query: 176 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSALTG 532 L ++ V+MV+VP + G G +P H P ++ ++PGV+S ++G ++ FV+ GFA + ++A EA + + V+ L + +L AT++ EKAEA + AL +A G Sbjct: 16 LFSEPVEMVVVPGTDGDFGAMPRHAPLLSTVRPGVISTYNGGKVQRRIFVAGGFAEV-TEDRCTVLADEAFDLASLSEEAVRARLQAADDRLKEATSEAEKAEAAQAKAIAEALLAARKG 134
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPE_RHORT (ATP synthase epsilon chain OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpC PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11 Identity = 38/120 (31.67%), Postives = 66/120 (55.00%), Query Frame = -3 Query: 176 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSALTG 532 L ++ V+MV+VP + G G +P H P ++ ++PGV+S ++G ++ FV+ GFA + ++A EA + + V+ L + +L AT++ EKAEA + AL +A G Sbjct: 16 LFSEPVEMVVVPGTDGDFGAMPRHAPLLSTVRPGVISTYNGGKVQRRIFVAGGFAEV-TEDRCTVLADEAFDLASLSEEAVRARLQAADDRLKEATSEAEKAEAAQAKAIAEALLAARKG 134 The following BLAST results are available for this feature:
BLAST of CX671444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671444 ID=CX671444; Name=CX671444; organism=Citrus sinensis; type=EST; length=666bpback to top |