EY692465

Overview
NameEY692465
Unique NameEY692465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: POTA_HAEI8 (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus influenzae (strain 86-028NP) GN=potA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = -3
Query:   49 QSMSQAVLHAQGICLGYGGNSVLEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPL-NGPHPR--VAVAFQDPSLLPWLSLEKNVAFGL 351
            Q  ++ ++  + I   YG N+++  F+L +  GE V+ILGPSG GK  +LR+LAG      GSI L GE + N P  +  +   FQ  +L P +++ +NVAFGL
Sbjct:    4 QPQNKPIIELRSIKKSYGSNTIINDFNLAINNGEFVTILGPSGCGKTTVLRLLAGLEELDSGSIILDGEDITNVPAEKRHINTVFQSYALFPHMTIFENVAFGL 107          
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: POTA_DESVH (Spermidine/putrescine import ATP-binding protein potA OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=potA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 35/103 (33.98%), Postives = 61/103 (59.22%), Query Frame = -3
Query:   34 VLHAQGICLGYGGNSVLEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPLNGPHP---RVAVAFQDPSLLPWLSLEKNVAFGLDFARK 333
            ++  +G+   +     L+  DL+++ GE +++LGPSG GK  +LR+++GF  P  G I L G+ ++   P   +V   FQ+ +L P +S+ +NV FGL   R+
Sbjct:    7 IIELRGVTKNFEDTCALDNIDLEIRNGEFLTLLGPSGCGKTTILRLISGFEKPDAGVITLKGQRMDDAPPEARQVNTVFQNYALFPHMSVRENVGFGLRMQRR 109          
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: CMPD_SYNP6 (Bicarbonate transport ATP-binding protein cmpD OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cmpD PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = -3
Query:   10 GGNSVLEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPLNGPHPRVAVAFQDPSLLPWLSLEKNVAFGLDFARKAHLSPEER 300
            G  +VL+G +L +Q GE + ++G SG GK  LL +++GF  P  GS+ L G+ ++ P P   V FQ+ +LLPW++  +NV   +D         E+R
Sbjct:   35 GPYTVLDGVNLTVQEGEFICVIGHSGCGKSTLLNMVSGFNQPSHGSVRLKGKEIDRPGPDRMVVFQNYALLPWMTAYENVYLAVDCVNPQMREGEKR 131          
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: CMPD_SYNE7 (Bicarbonate transport ATP-binding protein cmpD OS=Synechococcus elongatus (strain PCC 7942) GN=cmpD PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = -3
Query:   10 GGNSVLEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPLNGPHPRVAVAFQDPSLLPWLSLEKNVAFGLDFARKAHLSPEER 300
            G  +VL+G +L +Q GE + ++G SG GK  LL +++GF  P  GS+ L G+ ++ P P   V FQ+ +LLPW++  +NV   +D         E+R
Sbjct:   35 GPYTVLDGVNLTVQEGEFICVIGHSGCGKSTLLNMVSGFNQPSHGSVRLKGKEIDRPGPDRMVVFQNYALLPWMTAYENVYLAVDCVNPQMREGEKR 131          
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: POTA_HAEIN (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus influenzae GN=potA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = -3
Query:   49 QSMSQAVLHAQGICLGYGGNSVLEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPL-NGPHPR--VAVAFQDPSLLPWLSLEKNVAFGL 351
            Q  ++ ++  + I   YG N+++  F+L +  GE V+ILGPSG GK  +LR+LAG      GSI L GE + N P  +  +   FQ  +L P +++ +NVAFGL
Sbjct:    4 QLQNKPIIELRSIKKSYGSNTIINDFNLTINNGEFVTILGPSGCGKTTVLRLLAGLEELDSGSIILDGEDITNVPAEKRHINTVFQSYALFPHMTIFENVAFGL 107          
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: POTA_DESDG (Spermidine/putrescine import ATP-binding protein potA OS=Desulfovibrio desulfuricans (strain G20) GN=potA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = -3
Query:   34 VLHAQGICLGYGGNSVLEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPLNGPHP---RVAVAFQDPSLLPWLSLEKNVAFGLDFARK 333
            +   +G+   +     LE  DLQ++ GE +++LGPSG GK  +LR+L+GF  P  G + L G  +N   P   +V   FQ+ +L P +++  NV FGL   ++
Sbjct:    7 IFELRGVSKYFDDTCALENIDLQIRNGEFLTLLGPSGCGKTTILRLLSGFETPSSGDVILSGRVVNDVPPEQRQVNTVFQNYALFPHMTVRDNVGFGLKMQKR 109          
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: UGPC_RHOS4 (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=ugpC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.964e-12
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = -3
Query:   10 YGGNSVLEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPLNGPHPR---VAVAFQDPSLLPWLSLEKNVAFGLDFARKAHLSPEER 303
            Y G  V+ G D ++  GE V I+GPSG GK  LLR++AG      G I + G  +N   PR   +A+ FQ+ +L P +++ +N+A+GL  A+ +    EER
Sbjct:   13 YAGIEVIHGVDFEIADGEFVVIVGPSGCGKSTLLRMVAGLEEITAGEIAIGGRVVNRLEPRERDIAMVFQNYALYPHMTVRENMAYGLRIAKLSKAEIEER 113          
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: POTA_PSYCK (Spermidine/putrescine import ATP-binding protein potA OS=Psychrobacter cryohalolentis (strain K5) GN=potA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.964e-12
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = -3
Query:   49 PSGQSMSQAVLHAQGICLGYGGNSVLEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPLNG-PHPR--VAVAFQDPSLLPWLSLEKNVAFGL 360
            P+  +  + +L   G+   Y    VL+  +L ++ GE +++LGPSG GK  LLR++AGF  P  G+I+L G  + G P  +  V   FQ  +L P +++ +NVA+GL
Sbjct:   12 PASANTDKVLLQLTGLKKTYDNTEVLKDINLDIKHGEFITLLGPSGCGKTTLLRLIAGFEQPSAGAIYLDGVQMAGLPADKRPVNTVFQQYALFPHMTVAQNVAYGL 118          
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: Y4FO_RHISN (Uncharacterized ABC transporter ATP-binding protein y4fO OS=Rhizobium sp. (strain NGR234) GN=NGR_a03670 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = -3
Query:   10 QSMSQAVLHAQGICLGYGGNSVLEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPLNGPHP---RVAVAFQDPSLLPWLSLEKNVAFGLDFARKAHLSPEER 351
            ++M+ +VL    + +G+ G +V+   +L +  G  VS+LGPSG GK  +LR +AG     GG + L G+ +    P    V + FQ+ +L P +S  +N+AF L  A+K+    E R
Sbjct:    6 RAMADSVLSLNKLDVGFPGMTVVRDLNLDVADGAFVSLLGPSGSGKSSVLRTIAGLLPALGGRVLLEGQDITALPPERRNVGIVFQNYALFPTMSAFENIAFALRVAKKSKAEVERR 122          
BLAST of EY692465 vs. ExPASy Swiss-Prot
Match: Y412_METJA (Uncharacterized ABC transporter ATP-binding protein MJ0412 OS=Methanocaldococcus jannaschii GN=MJ0412 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = -3
Query:   46 YGGNSV--LEGFDLQLQPGEVVSILGPSGVGKFHLLRVLAGFPAPQGGSIHLLGEPLNGPHPRVAVAFQDPSLLPWLSLEKNVAFGLD 303
            + GN V  L+  +L++   E ++++GPSG GK  LLR++AG   P  G + L G+ + GP     V FQ  +L+PW ++ KNV FGL+
Sbjct:   28 FNGNRVKALDNINLEVYENEFLTVMGPSGCGKTTLLRIIAGLDYPTEGKVLLDGKEVKGPGADRGVVFQQYTLMPWRTVLKNVTFGLE 115          
The following BLAST results are available for this feature:
BLAST of EY692465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
POTA_HAEI82.910e-1239.42Spermidine/putrescine import ATP-binding protein p... [more]
POTA_DESVH2.910e-1233.98Spermidine/putrescine import ATP-binding protein p... [more]
CMPD_SYNP62.910e-1237.11Bicarbonate transport ATP-binding protein cmpD OS=... [more]
CMPD_SYNE72.910e-1237.11Bicarbonate transport ATP-binding protein cmpD OS=... [more]
POTA_HAEIN3.800e-1239.42Spermidine/putrescine import ATP-binding protein p... [more]
POTA_DESDG3.800e-1234.95Spermidine/putrescine import ATP-binding protein p... [more]
UGPC_RHOS44.964e-1238.61sn-glycerol-3-phosphate import ATP-binding protein... [more]
POTA_PSYCK4.964e-1236.45Spermidine/putrescine import ATP-binding protein p... [more]
Y4FO_RHISN6.483e-1234.19Uncharacterized ABC transporter ATP-binding protei... [more]
Y412_METJA6.483e-1239.77Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-H10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692465 ID=EY692465; Name=EY692465; organism=Citrus sinensis; type=EST; length=563bp
CCGGTTGCGTCGTTCTTCAGGACTGAGGTGCGCTTTTCGGGCAAAGTCCA
GGCCAAAGGCGACGTTCTTTTCCAGGCTCAACCACGGCAACAGGCTGGGG
TCCTGGAACGCCACCGCCACCCGCGGATGCGGGCCATTCAACGGCTCGCC
CAGCAGGTGAATGCTGCCGCCCTGGGGCGCCGGAAAACCGGCAAGCACCC
GCAGCAGGTGGAACTTGCCAACGCCGCTGGGGCCGAGGATCGACACCACT
TCGCCGGGCTGCAATTGCAGGTCGAACCCTTCCAGCACCGAGTTGCCCCC
ATAGCCCAGGCAAATTCCCTGGGCATGCAGTACCGCCTGGCTCATAGATT
GGCCTGACGGTTCAACTCGGTGCGCAACTGCACCAGGCTCGGGGTCACGA
TCGGCACAAACGCCGACTCGCGCCAACGCCGGGCGAAACCGCTGCCGTGG
GCAGTCACGTAGGCCTTGCCGCCGCTGGCTTGCAGCTCCCCTTGGACGGG
GCTGGGGGCAATTTCTTCGAGAGCAATGCGCAAGGCGGAACAACGGTACC
GGCTCGGTCCCGA
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