CX671433

Overview
NameCX671433
Unique NameCX671433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7606 contig Csv1_Contig7606:537..1312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671433 vs. ExPASy Swiss-Prot
Match: LLDD_ACTPJ (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.164e-33
Identity = 86/274 (31.39%), Postives = 136/274 (49.64%), Query Frame = 1
Query:   19 TLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--------FQGLDLGKMDEANDSGLAAYVAGQ--------------IDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 774
            TLS+ S   +EEV +      +FQLYV KDR  +  ++ RA+ AG   +  TVD P  G R  D  +  +   +  ++         F   D+G   + +  G  +   G+               D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD   ++  AL  +  A +G I +  D G+R G D+ + LALGA    +GR  VY+L A G+ GV  +L++ ++E  +AM L+  + + +ITRD +V
Sbjct:  104 TLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRDRHSGMS-GDYKEIRRALQAVTHPFWAWDVGIKGKPHTLGNVSAYTGKAVGLDDYVVWLGENFDPSISWKDLEWIRDFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGALSSARALPSIADAVKGDIKILADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGKAGVENMLDIFKKEMHVAMTLTSNQKISDITRDALV 376          
BLAST of CX671433 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP7 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.164e-33
Identity = 86/274 (31.39%), Postives = 136/274 (49.64%), Query Frame = 1
Query:   19 TLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--------FQGLDLGKMDEANDSGLAAYVAGQ--------------IDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 774
            TLS+ S   +EEV +      +FQLYV KDR  +  ++ RA+ AG   +  TVD P  G R  D  +  +   +  ++         F   D+G   + +  G  +   G+               D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD   ++  AL  +  A +G I +  D G+R G D+ + LALGA    +GR  VY+L A G+ GV  +L++ ++E  +AM L+  + + +ITRD +V
Sbjct:  104 TLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRDRHSGMS-GDYKEIRRALQAVTHPFWAWDVGIKGKPHTLGNVSAYTGKAVGLDDYVVWLGENFDPSISWKDLEWIRDFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGALSSARALPSIADAVKGDIKILADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGKAGVENMLDIFKKEMHVAMTLTSNQKISDITRDALV 376          
BLAST of CX671433 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP2 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.164e-33
Identity = 86/274 (31.39%), Postives = 136/274 (49.64%), Query Frame = 1
Query:   19 TLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--------FQGLDLGKMDEANDSGLAAYVAGQ--------------IDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 774
            TLS+ S   +EEV +      +FQLYV KDR  +  ++ RA+ AG   +  TVD P  G R  D  +  +   +  ++         F   D+G   + +  G  +   G+               D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD   ++  AL  +  A +G I +  D G+R G D+ + LALGA    +GR  VY+L A G+ GV  +L++ ++E  +AM L+  + + +ITRD +V
Sbjct:  104 TLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRDRHSGMS-GDYKEIRRALQAVTHPFWAWDVGIKGKPHTLGNVSAYTGKAVGLDDYVVWLGENFDPSISWKDLEWIRDFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGALSSARALPSIADAVKGDIKILADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGKAGVENMLDIFKKEMHVAMTLTSNQKISDITRDALV 376          
BLAST of CX671433 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.103e-33
Identity = 93/269 (34.57%), Postives = 139/269 (51.67%), Query Frame = 1
Query:   22 LSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ--------GLD--------LGKMDEANDSGL---AAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 771
            LS+ S  S+E++A    G  +FQLYV   R +   +V +A   G+  + LT D    G RE D+ NRF +P   + K            LD        L     +  S L   AA ++ Q+D S +W+ ++WL+ +    +LVKG+L+AED              SNHG RQLD   + +  L + V  T G+ PV +D G RRG+D+ KALALGA  + +GR  +Y LAA GE GV  VL +L+ + +  +A  GC  +  ++ D++
Sbjct:  107 LSTASNMSIEDLARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPMSYSAKVVLDGCLHPRWSLDFVRHGMPQLANFVSSQTSSLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT-GK-PVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYL 372          
BLAST of CX671433 vs. ExPASy Swiss-Prot
Match: LLDD2_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 2 OS=Mycobacterium tuberculosis GN=lldD2 PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.091e-31
Identity = 84/268 (31.34%), Postives = 133/268 (49.63%), Query Frame = 1
Query:   19 TLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF----------------QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 771
            +LS+ +T ++E++    P G ++FQLY+++DR+    LVRR   AGF  + +TVD P  G R  D++N  ++PP LTL+                  + L    +D    + +  Y+    D SL++ D+ W+++     ++VKG+ T +D              SNHG RQLD  P     L  V +       + +D G+  G D+  A+ALGA    IGR  +Y L A GE GV R +E+L+      M L G   L+E++  H+
Sbjct:  135 SLSTLATCAIEDLVIAVPQGRKWFQLYMWRDRDRSMALVRRVAAAGFDTMLVTVDVPVAGARLRDVRNGMSIPPALTLRTVLDAMGHPRWWFDLLTTEPLAFASLDRWPGT-VGEYLNTVFDPSLTFDDLAWIKSQWPGKLVVKGIQTLDDARAVVDRGVDGIVLSNHGGRQLDRAPVPFHLLPHVARELGKHTEILVDTGIMSGADIVAAIALGARCTLIGRAYLYGLMAGGEAGVNRAIEILQTGVIRTMRLLGVTCLEELSPRHV 401          
BLAST of CX671433 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.600e-30
Identity = 92/270 (34.07%), Postives = 142/270 (52.59%), Query Frame = 1
Query:   22 LSSWSTSSVEEVA-STGPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD---------------EANDSGLAAYVAGQIDRSLS--WKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL--KEITRD 765
            +S+ S +S E++  ++GPG R++QLY   +  +++   L+ RA++ G + + +T+DT  LG R +D+ N +   PFL   +  G++ G  D               E N    A   AG +   +S  W+D+K+L+     PI++KG++   D              SNHG RQ D   A++  L ++V A   ++ V  D GVR G D+ KALALGA  + IGRP VY LA EG  GV  V+  L  + EL + LSG  S+  K++ RD
Sbjct:  135 ISTASATSFEDIEKASGPGERWYQLYWPSNDHQDITISLLNRAKKTGCRVLIVTLDTFILGWRPSDMDNGYD--PFLNPDSI-GVEHGFSDPVFRKQFKEKHGVEVEENMLEAAKEFAGIVFPGISHDWEDLKFLRKHWDGPIVLKGIMNVPDAKKAVEYGMQGIVVSNHGGRQQDGGVASLTMLPKIVDAVGDKLDVLFDSGVRSGADIAKALALGAKMVLIGRPYVYGLALEGSSGVSHVIRCLLGDLELTLHLSGIVSVKPKDLNRD 401          
BLAST of CX671433 vs. ExPASy Swiss-Prot
Match: LLDD1_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 1 OS=Mycobacterium tuberculosis GN=lldD1 PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.223e-29
Identity = 87/270 (32.22%), Postives = 134/270 (49.63%), Query Frame = 1
Query:   22 LSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD----------TPRLGRREADIKNRFTLPP---------FLTLKNFQGLDL-----GKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 759
            LSS+++  +EEV +  P   FFQ+Y    R+ +A+ V RA +AG   + +T D          +P++   E ++K    L P         +   K  +  DL     G+  E      AAY         +W+D+ WL+ +   P ++KGV+  +D              SNHG   LD  PA+I AL  V  A   ++ V LDGG+RRG+DV KA+ALGA  + IGR  ++ LAA G+ GV  VL++LR   + A+   G  S+ +++
Sbjct:  107 LSSFASKPIEEVIAANPKT-FFQVYWQGGRDALAERVERARQAGAVGLVVTTDWTFSHGRDWGSPKIPE-EMNLKTILRLSPEAITRPRWLWKFAKTLRPPDLRVPNQGRRGEPGPPFFAAYGEWMATPPPTWEDIGWLRELWGGPFMLKGVMRVDDAKRAVDAGVSAISVSNHGGNNLDGTPASIRALPAVSAAVGDQVEVLLDGGIRRGSDVVKAVALGARAVMIGRAYLWGLAANGQAGVENVLDILRGGIDSALMGLGHASVHDLS 374          
The following BLAST results are available for this feature:
BLAST of CX671433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ACTPJ4.164e-3331.39L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACTP74.164e-3331.39L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACTP24.164e-3331.39L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
MDLB_PSEPU7.103e-3334.57(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]
LLDD2_MYCTU5.091e-3131.34Putative L-lactate dehydrogenase [cytochrome] 2 OS... [more]
YKN3_SCHPO9.600e-3034.07Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]
LLDD1_MYCTU6.223e-2932.22Putative L-lactate dehydrogenase [cytochrome] 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A07-B13-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671433 ID=CX671433; Name=CX671433; organism=Citrus sinensis; type=EST; length=776bp
CTTTGCTTCAATTTTCAGACATTGTCTTCGTGGTCTACTTCTAGCGTTGA
AGAGGTTGCTTCAACAGGACCTGGCATCCGCTTTTTCCAGCTCTATGTGT
ACAAGGACAGGAATGTGGTTGCTCAGCTTGTGAGAAGGGCTGAAAGAGCC
GGATTCAAGGCCATTGCTCTAACAGTTGATACCCCGAGGCTGGGTCGCAG
AGAAGCTGACATCAAAAACAGATTCACTCTACCACCATTTTTGACATTAA
AGAATTTTCAGGGTTTGGACCTTGGCAAGATGGACGAGGCAAATGACTCT
GGGCTTGCTGCCTATGTTGCTGGTCAAATTGATCGTTCTCTGAGCTGGAA
GGACGTGAAGTGGCTTCAAACAATCACCAAATTGCCAATTCTGGTGAAGG
GTGTACTCACAGCAGAGGATGCGCGGATTGCAGTTCAAGCTGGAGCAGCT
GGGATTATTGTATCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGC
CACTATCATGGCCCTGGAAGAGGTTGTGAAAGCTACTCAGGGGCGTATTC
CTGTGTTCTTGGATGGTGGTGTTAGGCGAGGAACTGATGTCTTCAAAGCC
TTGGCACTTGGAGCCTCTGGTATATTTATTGGACGACCAGTGGTGTACTC
ATTGGCAGCTGAGGGAGAGAAAGGCGTTAGAAGAGTACTCGAGATGCTGC
GTGAAGAATTTGAGCTAGCAATGGCACTAAGTGGTTGCCGCTCACTCAAA
GAGATTACTCGTGATCACATCGTCAC
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