CX671432

Overview
NameCX671432
Unique NameCX671432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_SALPC (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi C (strain RKS4594) GN=lldD PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.410e-29
Identity = 76/230 (33.04%), Postives = 119/230 (51.74%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 857
            TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  +Y+LA  G+ GV  +L+++ +E ++AM L+G +++ EI+ D +V E   SLP
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGLLDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEISGDSLVQELGKSLP 384          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_CAUSK (L-lactate dehydrogenase [cytochrome] OS=Caulobacter sp. (strain K31) GN=lldD PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.410e-29
Identity = 80/218 (36.70%), Postives = 113/218 (51.83%), Query Frame = -2
Query:  267 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEANDSGLAAYVAGQ--------------IDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 857
            TVD P  G R  D  +  T P     +  Q +       D+G M   +  G  A V G+               D S+ WKD+ W++   K P+++KGVL  ED             VSNHG RQLD V ++  AL ++ +A   R+ V  DGGVR G DV + LALGA G+ +GR  VY+LAA G  GV ++L+++ +E  +AMAL+G  +L +I R
Sbjct:  155 TVDMPVPGARYRDAHSGMTGPNAAMRRLVQAVFKPGWAWDVGVMGRPHTLGNVAPVLGENTGLEDFMGWLGANFDPSIQWKDLDWIRDQWKGPLILKGVLDPEDAKAAADIGADGIVVSNHGGRQLDGVLSSARALPDIAEAVGDRLTVLADGGVRSGLDVVRMLALGAKGVLLGRAFVYALAARGGPGVSQLLDLIEKEMRVAMALTGVNTLDQIDR 372          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_ECOUT (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain UTI89 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.678e-29
Identity = 76/230 (33.04%), Postives = 116/230 (50.43%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  +Y+LA  G+ GV  +L ++ +E ++AM L+G +S+ EIT+D +V      LP
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQVLGKELP 384          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_ECOK1 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O1:K1 / APEC GN=lldD PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.678e-29
Identity = 76/230 (33.04%), Postives = 116/230 (50.43%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  +Y+LA  G+ GV  +L ++ +E ++AM L+G +S+ EIT+D +V      LP
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSACALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQVLGKELP 384          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_ECO45 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.678e-29
Identity = 76/230 (33.04%), Postives = 116/230 (50.43%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  +Y+LA  G+ GV  +L ++ +E ++AM L+G +S+ EIT+D +V      LP
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQVLGKELP 384          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_AGRVS (L-lactate dehydrogenase [cytochrome] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=lldD PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.264e-28
Identity = 77/222 (34.68%), Postives = 115/222 (51.80%), Query Frame = -2
Query:  255 TVDTPRLGRREADIKNRFTLPPFLTLKNFQG-------LDLGKMDEANDSG-----------LAAYVAG---QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 857
            TVD P  G R  D  +  + P     +  Q        +D+G + + +D G           LA YV       D S+ WKD++W++   K P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + +A GA G+ IGR  VY+LAA G+ GV  +L++  +E  +AM L+G RS+ EI+ D +V
Sbjct:  155 TVDMPVPGARYRDAHSGMSGPNASLRRIIQAVMHPTWAIDVGLLGKPHDLGNVSAYRQQKTNLADYVGWLGENFDPSIGWKDLEWIRDFWKGPMIIKGILDPEDAKDAVRFGADGIIVSNHGGRQLDGVLSSARALPAIAAAVKGDLTILADSGIRSGLDVVRMIAQGADGVLIGRAFVYALAAAGQAGVENLLDLFAKEMRVAMTLTGARSIAEISPDSLV 376          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_ECO81 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O81 (strain ED1a) GN=lldD PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.156e-28
Identity = 76/230 (33.04%), Postives = 115/230 (50.00%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+       D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G I +  D G+R G DV + +ALGA  I +GR  +Y+LA  G+ GV  +L ++ +E ++AM L+G +S+ EIT+D +V      LP
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTILLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELP 384          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.816e-28
Identity = 75/230 (32.61%), Postives = 115/230 (50.00%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+       D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  +Y+LA  G+ GV  +L ++ +E ++AM L+G +S+ EIT+D +V      LP
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELP 384          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.816e-28
Identity = 75/230 (32.61%), Postives = 115/230 (50.00%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+       D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  +Y+LA  G+ GV  +L ++ +E ++AM L+G +S+ EIT+D +V      LP
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELP 384          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.816e-28
Identity = 75/230 (32.61%), Postives = 115/230 (50.00%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+       D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  +Y+LA  G+ GV  +L ++ +E ++AM L+G +S+ EIT+D +V      LP
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELP 384          
The following BLAST results are available for this feature:
BLAST of CX671432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SALPC7.410e-2933.04L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_CAUSK7.410e-2936.70L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_ECOUT9.678e-2933.04L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOK19.678e-2933.04L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO459.678e-2933.04L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_AGRVS1.264e-2834.68L-lactate dehydrogenase [cytochrome] OS=Agrobacter... [more]
LLDD_ECO812.156e-2833.04L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_SHISS2.816e-2832.61L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL2.816e-2832.61L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF82.816e-2832.61L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A07-B13-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671432 ID=CX671432; Name=CX671432; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTATCAATCAACATCCGAGCAAAAACTATATAGATAAAGTTTTA
AAGAAAGAATATACAGGAAAGGGCAGAAGTAGCCATAATCATCATAACAG
AAGCTTAAAATAATTCAGACTCAATTAAACATGAACAAGTTCTCCAAGAA
AAAGAAGTAATAGAAAGTAACCAAATTATTGCTCTTTCTTCTATTTTGCA
TGCACGTATCTATAACCTGGGAACCGGACGAGGGAGAGAAGCATCCCATT
CAGTGACGATGTGATCACGAGTAATCTCTTTGAGTGAGCGGCAACCACTT
AGTGCCATTGCTAGCTCAAATTCTTCACGCAGCATCTCGAGTACTCTTCT
AACGCCTTTCTCTCCCTCAGCTGCCAATGAGTACACCACTGGTCGTCCAA
TAAATATACCAGAGGCTCCAAGTGCCAAGGCTTTGAAGACATCAGTTCCT
CGCCTAACACCACCATCCAAGAACACAGGAATACGCCCCTGAGTAGCTTT
CACAACCTCTTCCAGGGCCATGATAGTGGCAGGGACATAGTCAAGTTGAC
GAGCTCCATGATTGGATACAATAATCCCAGCTGCTCCAGCTTGAACTGCA
ATCCGCGCATCCTCTGCTGTGAGTACACCCTTCACCAGAATTGGCAATTT
GGTGATTGTTTGAAGCCACTTCACGTCCTTCCAGCTCAGAGAACGATCAA
TTTGACCAGCAACATAGGCAGCAAGCCCAGAGTCATTTGCCTCGTCCATC
TTGCCAAGGTCCAAACCCTGAAAATTCTTTAATGTCAAAAATGGTGGTAG
AGTGAATCTGTTTTTGATGTCAGCTTCTCTGCGACCCAGCCTCGGGGTAT
CAACTGTTAGAGCA
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