CX671432

Overview
NameCX671432
Unique NameCX671432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7606 contig Csv1_Contig7606:701..1564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_YERPA (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=lldD PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.193e-28
Identity = 74/221 (33.48%), Postives = 114/221 (51.58%), Query Frame = -2
Query:  258 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEANDSG-LAAY-------------VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 857
            TVD P  G R  D  +  + P     +  Q +       D+G   + +D G ++AY             +A   D S+SWKD++W++   + P+++KG+L  ED             VSNHG RQLD V +T  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  VY+LA  GE GV  +L ++ +E  +AM L+G + + +I RD +
Sbjct:  155 TVDMPVPGARYRDAHSGMSGPNAAARRLLQAIAHPQWAWDVGLNGKPHDLGNISAYLGKPTTLEDYMGWIATNFDPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_YERP3 (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=lldD PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.193e-28
Identity = 74/221 (33.48%), Postives = 114/221 (51.58%), Query Frame = -2
Query:  258 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEANDSG-LAAY-------------VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 857
            TVD P  G R  D  +  + P     +  Q +       D+G   + +D G ++AY             +A   D S+SWKD++W++   + P+++KG+L  ED             VSNHG RQLD V +T  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  VY+LA  GE GV  +L ++ +E  +AM L+G + + +I RD +
Sbjct:  155 TVDMPVPGARYRDAHSGMSGPNAAARRLLQAIAHPQWAWDVGLNGKPHDLGNISAYLGKPTTLEDYMGWIATNFDPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_XANOR (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.397e-27
Identity = 76/234 (32.48%), Postives = 117/234 (50.00%), Query Frame = -2
Query:  225 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMD--EANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI--VTEWDASLPRP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +     N +GL  Y+       D S++WKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA+G+ GV  +L ++ +E  +AM L+G  S+ +I+ D +  VT   A+   P
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGVLGKPHDLGNISAYRGNPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISADALSRVTREQANAVSP 388          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_XANOP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.397e-27
Identity = 76/234 (32.48%), Postives = 117/234 (50.00%), Query Frame = -2
Query:  225 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMD--EANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI--VTEWDASLPRP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +     N +GL  Y+       D S++WKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA+G+ GV  +L ++ +E  +AM L+G  S+ +I+ D +  VT   A+   P
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGVLGKPHDLGNISAYRGNPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISADALSRVTREQANAVSP 388          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_XANOM (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.397e-27
Identity = 76/234 (32.48%), Postives = 117/234 (50.00%), Query Frame = -2
Query:  225 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMD--EANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI--VTEWDASLPRP 857
            TVD P  G R  D  +  + P     +  Q +                DLG +     N +GL  Y+       D S++WKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA+G+ GV  +L ++ +E  +AM L+G  S+ +I+ D +  VT   A+   P
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGVLGKPHDLGNISAYRGNPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISADALSRVTREQANAVSP 388          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.397e-27
Identity = 78/232 (33.62%), Postives = 118/232 (50.86%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEAND-----------SGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI--VTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +       D+G + + +D           +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA G+ GV  +L ++  E  +AM L+G  S+ EI+ D +  VT   A +P
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEISGDALSRVTREAAVVP 386          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.397e-27
Identity = 78/232 (33.62%), Postives = 118/232 (50.86%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEAND-----------SGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI--VTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +       D+G + + +D           +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA G+ GV  +L ++  E  +AM L+G  S+ EI+ D +  VT   A +P
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEISGDALSRVTREAAVVP 386          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.397e-27
Identity = 73/222 (32.88%), Postives = 114/222 (51.35%), Query Frame = -2
Query:  255 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEANDSGLAAYVAGQ--------------IDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 857
            TVD P  G R  D  +  + P     +  Q +       D+G   + +D G  +   G+               D S+SWKD+ W++   + P+++KG+L  ED             VSNHG RQLD V +T  AL  + +A +G I +  D G+R G DV + +ALGA G+ +GR   Y+LAA G+ GV  +LE++ +E  +AM L G +++ +I+ D +V
Sbjct:  155 TVDMPVPGARYRDAHSGMSGPNAAVRRMLQAVTHPQWAWDVGLCGKPHDLGNVSAYRGKPTSLEDYIGWLGTNFDPSISWKDLDWIREFWQGPMIIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSTAHALPAIAEAVKGDITLLADSGIRSGLDVVRMIALGADGVLLGRAFAYALAAAGQAGVANLLELIDKEMRVAMTLIGAKTIADISADSLV 376          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.825e-27
Identity = 78/232 (33.62%), Postives = 118/232 (50.86%), Query Frame = -2
Query:  231 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEAND-----------SGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI--VTEWDASLP 857
            TVD P  G R  D  +  + P     +  Q +       D+G + + +D           +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA G+ GV  +L ++  E  +AM L+G  S+ EI+ D +  VT   A +P
Sbjct:  155 TVDMPTPGARYRDAHSGMSGPNAPLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEISGDALSRVTREAAVVP 386          
BLAST of CX671432 vs. ExPASy Swiss-Prot
Match: LLDD_BARHE (L-lactate dehydrogenase [cytochrome] OS=Bartonella henselae GN=lldD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.384e-27
Identity = 59/155 (38.06%), Postives = 93/155 (60.00%), Query Frame = -2
Query:  252 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 716
            ++    D S+ W D++W++   K  +++KG+L  ED             VSNHG RQLD V +T+ AL  + +A +  + + +D GVR G DV + +A GA  + IGR  VY+LAA GEKGV  ++++   E  +AM L+G R++KEITR+ + +
Sbjct:  223 WLGANFDPSIGWHDLQWIRDFWKGKMILKGILDPEDAREAIQFGADGIVVSNHGGRQLDGVLSTVRALPAIAEAVKSDLTILVDSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLIDLFANEMRVAMTLTGVRAIKEITRESLAS 377          
The following BLAST results are available for this feature:
BLAST of CX671432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_YERPA8.193e-2833.48L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERP38.193e-2833.48L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_XANOR1.397e-2732.48L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOP1.397e-2732.48L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOM1.397e-2732.48L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANCP1.397e-2733.62L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC81.397e-2733.62L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_SERP51.397e-2732.88L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_XANCB1.825e-2733.62L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_BARHE2.384e-2738.06L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A07-B13-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671432 ID=CX671432; Name=CX671432; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTATCAATCAACATCCGAGCAAAAACTATATAGATAAAGTTTTA
AAGAAAGAATATACAGGAAAGGGCAGAAGTAGCCATAATCATCATAACAG
AAGCTTAAAATAATTCAGACTCAATTAAACATGAACAAGTTCTCCAAGAA
AAAGAAGTAATAGAAAGTAACCAAATTATTGCTCTTTCTTCTATTTTGCA
TGCACGTATCTATAACCTGGGAACCGGACGAGGGAGAGAAGCATCCCATT
CAGTGACGATGTGATCACGAGTAATCTCTTTGAGTGAGCGGCAACCACTT
AGTGCCATTGCTAGCTCAAATTCTTCACGCAGCATCTCGAGTACTCTTCT
AACGCCTTTCTCTCCCTCAGCTGCCAATGAGTACACCACTGGTCGTCCAA
TAAATATACCAGAGGCTCCAAGTGCCAAGGCTTTGAAGACATCAGTTCCT
CGCCTAACACCACCATCCAAGAACACAGGAATACGCCCCTGAGTAGCTTT
CACAACCTCTTCCAGGGCCATGATAGTGGCAGGGACATAGTCAAGTTGAC
GAGCTCCATGATTGGATACAATAATCCCAGCTGCTCCAGCTTGAACTGCA
ATCCGCGCATCCTCTGCTGTGAGTACACCCTTCACCAGAATTGGCAATTT
GGTGATTGTTTGAAGCCACTTCACGTCCTTCCAGCTCAGAGAACGATCAA
TTTGACCAGCAACATAGGCAGCAAGCCCAGAGTCATTTGCCTCGTCCATC
TTGCCAAGGTCCAAACCCTGAAAATTCTTTAATGTCAAAAATGGTGGTAG
AGTGAATCTGTTTTTGATGTCAGCTTCTCTGCGACCCAGCCTCGGGGTAT
CAACTGTTAGAGCA
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