CX043580

Overview
NameCX043580
Unique NameCX043580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:863..1201. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.451e-15
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            F+RE LG+NFLTGEKV SPGEE D+VFTAM +G I+DP+L+CL  WNGA
Sbjct:  660 FIREELGTNFLTGEKVMSPGEECDRVFTAMSKGLIVDPLLKCLEGWNGA 708          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.451e-15
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG++ LTGEK+ SPGEE  KVF A+C GK++DP+LECL+EWNGA
Sbjct:  657 FVREELGTSLLTGEKIKSPGEECYKVFNAICAGKLVDPLLECLKEWNGA 705          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL1_PETCR (Phenylalanine ammonia-lyase 1 OS=Petroselinum crispum GN=PAL1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.451e-15
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVR+ LG+ +LTGEKV SPGEEF+KVF AM +G+IIDP+LECL  WNGA
Sbjct:  663 FVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGA 711          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.100e-14
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = -2
Query:  227 VREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 370
            VR+ +G+  LTGEKV SPGEE DKVFTA C G+IIDP+LECL+ WNGA
Sbjct:  669 VRQEVGTELLTGEKVRSPGEEIDKVFTAFCNGQIIDPLLECLKSWNGA 716          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.100e-14
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = -2
Query:  230 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNG 373
            FVRE LG   LTGEK  SP EEF+KV+TAMCQ KIIDP+LECL +WNG
Sbjct:  658 FVREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLEDWNG 705          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.437e-14
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG+  LTGEKV SPGEEFDKVFTA+C GK+IDP    L+EWNGA
Sbjct:  518 FVREELGTVLLTGEKVGSPGEEFDKVFTAICAGKLIDPCWSVLKEWNGA 566          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL1_SOLTU (Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum GN=PAL-1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.451e-14
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = -2
Query:  227 VREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 370
            VR+ LG+  LTGEKV SPGEE +KVFTAMC G+I DP+LECL+ WNGA
Sbjct:  668 VRQELGTELLTGEKVRSPGEEIEKVFTAMCNGQINDPLLECLKSWNGA 715          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.201e-14
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVR+ L +  LTGE V SPGEEFDKVF A+  GK+IDP+LECL+EWNGA
Sbjct:  654 FVRDELNTELLTGENVRSPGEEFDKVFLAISDGKLIDPLLECLKEWNGA 702          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.201e-14
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG+  LTGEKV SPGE  DKVFTA+C G IIDP+LECL+ W+GA
Sbjct:  655 FVREELGTEMLTGEKVKSPGEVCDKVFTAVCDGGIIDPLLECLKSWDGA 703          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVR  LG+  LTGEKV SPGEE D+VF A+C+GK++DP+L CL  WNGA
Sbjct:  652 FVRGELGTELLTGEKVRSPGEELDQVFNALCEGKLVDPLLACLEAWNGA 700          
The following BLAST results are available for this feature:
BLAST of CX043580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PALY_DIGLA6.451e-1571.43Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL1_RUBID6.451e-1569.39Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PAL1_PETCR6.451e-1571.43Phenylalanine ammonia-lyase 1 OS=Petroselinum cris... [more]
PAL5_SOLLC1.100e-1470.83Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL3_PHAVU1.100e-1472.92Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL4_POPKI1.437e-1473.47Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PAL1_SOLTU2.451e-1470.83Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... [more]
PAL4_ARATH3.201e-1469.39Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]
PAL2_IPOBA3.201e-1471.43Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PAL2_LITER9.315e-1465.31Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A12-A24-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043580 ID=CX043580; Name=CX043580; organism=Citrus sinensis; type=EST; length=374bp
TTTTTTTTTTTTTTTTTAAGCCAAAAAATTTTAAAGTGAGAAAGAAGAAA
AATAAAGGACAATAAGTCTTATAACCTTAAATGAAAAAACCAATAGAAGT
GATTGAAATATTACAGATGGATTTGTACCACTGACTCGCATGGGCAAATT
CTATGAACACAAAAACACAAGGGATTGAAGACCATGTTATTAAACAAAAT
AAAAACAACTAACAAATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACA
TTCCAGCATTGGATCAATGATCTTGCCCTGGCACATTGCTGTAAAAACTT
TGTCAAATTCCTCGCCGGGGGAAGCAACTTTTTCCCCTGTTAAAAAATTA
GACCCGAGCCCCTCCCTCACGAAC
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