CX043580

Overview
NameCX043580
Unique NameCX043580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:863..1201. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = -2 
Query:  230 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNG 373
            FVRE LG  FLTGEK+ SPGEE +KVF  + QGK+IDPML+CL+EWNG
Sbjct:  648 FVREELGCVFLTGEKLKSPGEECNKVFLGISQGKLIDPMLDCLKEWNG 695
[Close]
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.075e-13
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = -2 
Query:  230 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNG 373
            FVR+ LG+ +LTGEK  SPGEE DKVF AM QGK ID +LECL+EWNG
Sbjct:  647 FVRKELGTEYLTGEKTRSPGEEVDKVFVAMNQGKHIDALLECLKEWNG 694
[Close]
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.075e-13
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = -2 
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVR  L +  LTGE V SPGE+FDKVF A+ QGK+IDP+ ECL+EWNGA
Sbjct:  641 FVRNELETRLLTGEDVRSPGEDFDKVFRAISQGKLIDPLFECLKEWNGA 689
[Close]
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.885e-13
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = -2 
Query:  230 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNG 373
            FVRE LG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG
Sbjct:  660 FVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNG 707
[Close]
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.885e-13
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = -2 
Query:  230 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNG 373
            FVRE LG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG
Sbjct:  660 FVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNG 707
The following BLAST results are available for this feature:
BLAST of CX043580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PAL1_ORYSJ9.315e-1470.83Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_WHEAT2.075e-1370.83Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]
PAL3_ARATH2.075e-1367.35Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL2_ORYSJ7.885e-1366.67Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSI7.885e-1366.67Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A12-A24-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043580 ID=CX043580; Name=CX043580; organism=Citrus sinensis; type=EST; length=374bp
TTTTTTTTTTTTTTTTTAAGCCAAAAAATTTTAAAGTGAGAAAGAAGAAA
AATAAAGGACAATAAGTCTTATAACCTTAAATGAAAAAACCAATAGAAGT
GATTGAAATATTACAGATGGATTTGTACCACTGACTCGCATGGGCAAATT
CTATGAACACAAAAACACAAGGGATTGAAGACCATGTTATTAAACAAAAT
AAAAACAACTAACAAATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACA
TTCCAGCATTGGATCAATGATCTTGCCCTGGCACATTGCTGTAAAAACTT
TGTCAAATTCCTCGCCGGGGGAAGCAACTTTTTCCCCTGTTAAAAAATTA
GACCCGAGCCCCTCCCTCACGAAC
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