CX671429

Overview
NameCX671429
Unique NameCX671429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.056e-20
Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 3
Query:  120 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+   +L +++GL+ +  R            T +   +DW
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.056e-20
Identity = 49/162 (30.25%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  120 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +     EL  +L +  L    LL+  NK D P A++  ++ +++GL+S+ +R            T +   +DW
Sbjct:   12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.380e-20
Identity = 54/152 (35.53%), Postives = 93/152 (61.18%), Query Frame = 3
Query:  102 LNW----LRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            +NW    L SL    +  +L  +GL NAGKT+L++++     +  + PT+     +++ GNV    +DLGG  + R +W+ Y   V+ +V++VDA D++  P +++EL  LLS   L+ +P +VLGNKID P+A+S+++L  Q+G+   T +
Sbjct:    4 INWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAI-LQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQTTGK 154          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.380e-20
Identity = 51/148 (34.46%), Postives = 89/148 (60.14%), Query Frame = 3
Query:  141 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 581
            ++ ++GL  AGKT+++  +  G    D +PTVGFN+  +   G+V++ LWD+GGQ + R+ W+ Y   +  +VYV+D+ D   LP + +EL ++L  P++ G+P LVL NK + P+AL   ++  ++ L+   D   C  + +C   T
Sbjct:   12 QVVMLGLDCAGKTTILYKLK-GNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDALPLLEIRNRLDLERFQDH--CWELRACSALT 156          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.380e-20
Identity = 49/147 (33.33%), Postives = 88/147 (59.86%), Query Frame = 3
Query:  132 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVC-CYMISC 569
            +++ L ++GL NAGKT+    I  G + ED+ PTVGF+   + +G   + ++DLGG  R R +W+ Y      +++VVD++D + +  ++  + ++L  P ++G P+LVL NK DK  AL + D++E + L+ + +   C C +  C
Sbjct:   20 RKVTLVMVGLDNAGKTATAKGIQ-GEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPC 165          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 57/153 (37.25%), Postives = 89/153 (58.17%), Query Frame = 3
Query:   81 MGLWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT 536
            M L + F   L SL  ++++ ++  +GL NAGKT+L++++      +   PT      +++ GN+  K +DLGG    R +W  Y   V A+VY+VDA D +  P ++ EL  LLS  SL  +P L+LGNKID P A S+++L   +GL  +T
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVT 152          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 56/152 (36.84%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  102 LNW----LRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            +NW    L SL    +  +L  +GL NAGKT+L++++     +  + PT      ++  GN     +DLGG  + R +W+ Y   VS IV++VDA D++  P S++EL  LL+   L  +P L+LGNKID P+A+S+++L  Q+GL   T +
Sbjct:    4 INWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAT-LQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGK 154          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 52/148 (35.14%), Postives = 90/148 (60.81%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK 527
            LW+ F   L  L    ++ +L  +GL NAGKT+L++++     ++  +PT+     +++ G ++   +DLGG  + R +W+ Y  AV A+V+++D AD + +  SR EL  LL    +  +P+L+LGNKIDKP ALS++ L  Q+ ++
Sbjct:    4 LWDWFNGVLNMLGLANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQH-VPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQ 150          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 54/152 (35.53%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  102 LNWLRSLF-----FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            +NW   L        +  +L  +GL NAGKT+L++++     +  + PT      ++  GN     +DLGG  + R +W+ Y   VS IV++VDA D++  P S++EL  LL+   L  +P L+LGNKID P+A+S+++L  Q+GL   T +
Sbjct:    4 INWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAI-LQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGK 154          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  102 LNWLRSLF-----FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            +NW   +        +  +L  +GL NAGKT+L++++     +  + PT      ++  GN     +DLGG  + R +W+ Y   VS IV++VDA D++  P S++EL  LL+   L  +P L+LGNKID P+A+S+++L  Q+GL   T +
Sbjct:    4 INWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAT-LQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGK 154          
The following BLAST results are available for this feature:
BLAST of CX671429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF5_HUMAN1.056e-2030.86ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF4_BOVIN1.056e-2030.25ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
SAR1_CHAGB1.380e-2035.53Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]
ARL11_RAT1.380e-2034.46ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
AR13B_MOUSE1.380e-2033.33ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
SAR2_SOLLC2.354e-2037.25GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_NEOFI2.354e-2036.84Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_CAEEL2.354e-2035.14GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1_ASPNC2.354e-2035.53Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_ASPFU2.354e-2034.87Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A05-B9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671429 ID=CX671429; Name=CX671429; organism=Citrus sinensis; type=EST; length=774bp
GCAAGAAAAGTTTTTTCGCTTTTTCCCAGCTTTTATACTTCAAAGGCGAA
ACCCTAGCTTCTTATTTTGTCGAATAAAAGATGGGATTATGGGAAGCTTT
TCTCAACTGGCTTCGAAGTCTCTTCTTTAAACAAGAAATGGAGCTATCTT
TGATAGGGCTTCAGAATGCAGGCAAGACATCCCTTGTGAATGTTATCGCA
ACTGGTGGATATAGTGAAGATATGATCCCAACAGTAGGATTTAATATGAG
GAAAGTGACTAAGGGGAATGTCACAATAAAGCTGTGGGATCTTGGAGGCC
AACCACGGTTTCGCAGTATGTGGGAGAGATACTGTCGTGCAGTTTCAGCT
ATTGTTTACGTTGTTGATGCTGCTGATTATGATAACTTGCCTGTGTCAAG
AAGTGAACTCCATGACTTGTTAAGTAAACCCTCGCTGAATGGTATCCCAT
TGCTGGTACTGGGAAACAAGATTGATAAACCAGAAGCCTTGTCTAAAGAG
GATCTGATGGAACAAATGGGGCTGAAGTCCATTACCGATAGAGAAGTTTG
TTGCTACATGATTTCATGCAAAAACTCTACCAACATTGACACGGTTATTG
ATTGGCTTGTAAAGCATTCAAAATCAAAGAGTTGAGTTTCTTCCTCTAGT
TTTGAACTACATGGGAGCCTGTTTTCAACAACTGATTCAGGATGAGTTGA
GTGAGCTGTACTGTTAGTCTGCTCGGGTCAGTCGATGTGTGACCATAGTT
TTTTATTTCGACTTGGCTTTTTAT
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