CX671429

Overview
NameCX671429
Unique NameCX671429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 51/147 (34.69%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 524
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD+  L  S+ EL+ L++  +++ +P+L+LGNKID+ +A+S+E L E  GL
Sbjct:    8 IYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGL 153          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 51/147 (34.69%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 524
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD+  L  S+ EL+ L++  +++ +P+L+LGNKID+ +A+S+E L E  GL
Sbjct:    8 IYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGL 153          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 50/162 (30.86%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  120 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ R R +W+ Y +    +++VVD+ D + +     EL  +L    L    LL+  NK D P A++  ++ +++GL+S+ +R            T +   +DW
Sbjct:   12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 50/162 (30.86%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  120 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ R R +W+ Y +    +++VVD+ D + +     EL  +L    L    LL+  NK D P A++  ++ +++GL+S+ +R            T +   +DW
Sbjct:   12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 54/152 (35.53%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  102 LNW----LRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            +NW    L SL    +  +L  +GL NAGKT+L++++     +  + PT+     ++  GNV    +DLGG  + R +W  Y   V+ +V++VDA D++  P +++EL  LLS   L+ +P ++LGNKID P+A+S+++L  Q+GL   T +
Sbjct:    4 VNWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAI-LQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLYQTTGK 154          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 56/152 (36.84%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  102 LNW----LRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            +NW    L SL    +  +L  +GL NAGKT+L++++     +  + PT      ++  GN     +DLGG  + R +W+ Y   VS IV++VDA D++  P S++EL  LL+   L  +P L+LGNKID P+A+S+++L  Q+GL   T +
Sbjct:    4 INWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAV-LQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGK 154          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 51/147 (34.69%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 524
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD+  L  S+ EL+ L++  +++ +P+L+LGNKID+ +A+S+E L E  GL
Sbjct:    8 IYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGL 153          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 51/147 (34.69%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 524
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD+  L  S+ EL+ L++  +++ +P+L+LGNKID+ +A+S+E L E  GL
Sbjct:    8 IYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGL 153          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 50/165 (30.30%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  111 LRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            L  LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D D +  +  EL ++L +  L    LLV  NK D P A++  +L +++ L  + +R              +   +DW
Sbjct:    9 LTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNRHWFIQSTCATQGHGLYEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.015e-20
Identity = 54/152 (35.53%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  102 LNWLRSLF-----FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            +NW   L        +  +L  +GL NAGKT+L++++     +  + PT      ++  GN     +DLGG  + R +W+ Y   VS IV++VDA D++  P S++EL  LL+   L  +P L+LGNKID P+A+S++D+  Q+GL   T +
Sbjct:    4 INWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAI-LQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLYQTTGK 154          
The following BLAST results are available for this feature:
BLAST of CX671429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
SAR1A_PONAB2.354e-2034.69GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN2.354e-2034.69GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
ARF4_PONAB2.354e-2030.86ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN2.354e-2030.86ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
SAR1_TRIRE3.074e-2035.53Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
SAR1_ASPOR3.074e-2036.84Small COPII coat GTPase sar1 OS=Aspergillus oryzae... [more]
SAR1A_PIG3.074e-2034.69GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_BOVIN3.074e-2034.69GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
ARF2_DROME3.074e-2030.30ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
SAR1_ASPNG4.015e-2035.53Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A05-B9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671429 ID=CX671429; Name=CX671429; organism=Citrus sinensis; type=EST; length=774bp
GCAAGAAAAGTTTTTTCGCTTTTTCCCAGCTTTTATACTTCAAAGGCGAA
ACCCTAGCTTCTTATTTTGTCGAATAAAAGATGGGATTATGGGAAGCTTT
TCTCAACTGGCTTCGAAGTCTCTTCTTTAAACAAGAAATGGAGCTATCTT
TGATAGGGCTTCAGAATGCAGGCAAGACATCCCTTGTGAATGTTATCGCA
ACTGGTGGATATAGTGAAGATATGATCCCAACAGTAGGATTTAATATGAG
GAAAGTGACTAAGGGGAATGTCACAATAAAGCTGTGGGATCTTGGAGGCC
AACCACGGTTTCGCAGTATGTGGGAGAGATACTGTCGTGCAGTTTCAGCT
ATTGTTTACGTTGTTGATGCTGCTGATTATGATAACTTGCCTGTGTCAAG
AAGTGAACTCCATGACTTGTTAAGTAAACCCTCGCTGAATGGTATCCCAT
TGCTGGTACTGGGAAACAAGATTGATAAACCAGAAGCCTTGTCTAAAGAG
GATCTGATGGAACAAATGGGGCTGAAGTCCATTACCGATAGAGAAGTTTG
TTGCTACATGATTTCATGCAAAAACTCTACCAACATTGACACGGTTATTG
ATTGGCTTGTAAAGCATTCAAAATCAAAGAGTTGAGTTTCTTCCTCTAGT
TTTGAACTACATGGGAGCCTGTTTTCAACAACTGATTCAGGATGAGTTGA
GTGAGCTGTACTGTTAGTCTGCTCGGGTCAGTCGATGTGTGACCATAGTT
TTTTATTTCGACTTGGCTTTTTAT
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