CX671429

Overview
NameCX671429
Unique NameCX671429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARD1_CAEEL (Putative GTP-binding protein ard-1 homolog OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 47/159 (29.56%), Postives = 73/159 (45.91%), Query Frame = 3
Query:  135 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED-LMEQMGLKSITDREVCCYMISCKNSTNIDTVID 602
            E  + L+GL  AGKTS+V  +        M P  T+GFN+  +   N  +  WD+GG P+ R +W+ Y     AI YV+D    +    +  EL+ ++S P +   P++V  N+ D        D L+ Q+          CC        + ID +ID
Sbjct:  369 ESRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNYRLNFWDVGGLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSDPLVGTCPVIVAVNRKDGYALNGHMDALLSQLEALPFQHHFHCC---DAATGSGIDQIID 524          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 48/182 (26.37%), Postives = 100/182 (54.95%), Query Frame = 3
Query:  102 LNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDM-----------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA-VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID-KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            ++++++LF F    ++ ++G++N GKT+L+  I    YSE++           IPT GFN+  +    V   +WD+GG+   R  +  Y  + + +I++V D++D ++L  S+ E   L ++ SL  +P L++ NK D K + +  +++++    KS  +  +   ++S  N+ ++   I+W
Sbjct:    5 ISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKF-YSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETI---LMSQNNNDDLIKCINW 182          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 41/152 (26.97%), Postives = 73/152 (48.03%), Query Frame = 3
Query:  111 LRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCC 554
            L S+F  QE  + ++GL N GKT+++    T      M PT+G N+ ++        +WD+        +W  Y      I+ V+D+ D D L  +R EL+ +L+  +L    +L+  NK D  +++   ++   + L +I D     + CC
Sbjct:    8 LMSIFGNQEHTVIIVGLDNEGKTTILYRFLTNEVVH-MCPTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIKDHSWHIQGCC 158          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 47/168 (27.98%), Postives = 87/168 (51.79%), Query Frame = 3
Query:  132 QEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI----PLLVLGNKIDKPE---ALSKEDLMEQMGLKSITDREVCCYMISCKNST--NIDTVID 602
            +E+   ++GL N+GK+++VN +       ++ ++PTVGF +  +   +VTI LWD+GGQ   R  W+ Y     A+++ +D +       +  EL +L+++   N I     ++V+ NKID  E    L +  L+ +  LK +   ++   ++ C   T   ID + D
Sbjct:   15 KEIRCLILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDE-NRIGYECAVIVVLNKIDLVEDKSELHRRCLLVESELKCLFKPDIRIELVKCSGVTGEGIDNLRD 181          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: RAB7B_BOVIN (Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 46/159 (28.93%), Postives = 80/159 (50.31%), Query Frame = 3
Query:  129 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 587
            K +++L +IG    GKTSL++      + ED   T+G ++  + +   + T+KL  WD GGQ RFRSM   + +     V   D  D ++     +   D+L+K  P     P++VLGNKID    L    + +++      ++++  + +S KN  N+
Sbjct:    6 KVDLKLIIIGALGVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPMEQPYPMVVLGNKID----LEDRQVPQEVAQGWCKEKDIPYFEVSAKNDINV 160          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 51/169 (30.18%), Postives = 85/169 (50.30%), Query Frame = 3
Query:  129 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD---AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---LKSITDREVCCYMISCKNSTNIDTVID 602
            K  +++ ++G    GKTSL++      YS+    T+G  F  ++VT       T+++WD  GQ RF+S+   + R     V V D   A+ ++N+   R E     +  S    P ++LGNKID  E  SK+ + E+      KS+ D  +  ++ S KN+ N+DT  +
Sbjct:    6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE--SKKIVSEKSAQELAKSLGD--IPLFLTSAKNAINVDTAFE 170          
The following BLAST results are available for this feature:
BLAST of CX671429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARD1_CAEEL4.753e-1329.56Putative GTP-binding protein ard-1 homolog OS=Caen... [more]
ARLX_DICDI4.024e-1226.37ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
ARL5C_HUMAN4.024e-1226.97Putative ADP-ribosylation factor-like protein 5C O... [more]
CIN4_YEAST1.529e-1127.98GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
RAB7B_BOVIN5.811e-1128.93Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B ... [more]
YPT7_YEAST7.589e-1130.18GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A05-B9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671429 ID=CX671429; Name=CX671429; organism=Citrus sinensis; type=EST; length=774bp
GCAAGAAAAGTTTTTTCGCTTTTTCCCAGCTTTTATACTTCAAAGGCGAA
ACCCTAGCTTCTTATTTTGTCGAATAAAAGATGGGATTATGGGAAGCTTT
TCTCAACTGGCTTCGAAGTCTCTTCTTTAAACAAGAAATGGAGCTATCTT
TGATAGGGCTTCAGAATGCAGGCAAGACATCCCTTGTGAATGTTATCGCA
ACTGGTGGATATAGTGAAGATATGATCCCAACAGTAGGATTTAATATGAG
GAAAGTGACTAAGGGGAATGTCACAATAAAGCTGTGGGATCTTGGAGGCC
AACCACGGTTTCGCAGTATGTGGGAGAGATACTGTCGTGCAGTTTCAGCT
ATTGTTTACGTTGTTGATGCTGCTGATTATGATAACTTGCCTGTGTCAAG
AAGTGAACTCCATGACTTGTTAAGTAAACCCTCGCTGAATGGTATCCCAT
TGCTGGTACTGGGAAACAAGATTGATAAACCAGAAGCCTTGTCTAAAGAG
GATCTGATGGAACAAATGGGGCTGAAGTCCATTACCGATAGAGAAGTTTG
TTGCTACATGATTTCATGCAAAAACTCTACCAACATTGACACGGTTATTG
ATTGGCTTGTAAAGCATTCAAAATCAAAGAGTTGAGTTTCTTCCTCTAGT
TTTGAACTACATGGGAGCCTGTTTTCAACAACTGATTCAGGATGAGTTGA
GTGAGCTGTACTGTTAGTCTGCTCGGGTCAGTCGATGTGTGACCATAGTT
TTTTATTTCGACTTGGCTTTTTAT
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