CX671429

Overview
NameCX671429
Unique NameCX671429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 54/149 (36.24%), Postives = 87/149 (58.39%), Query Frame = 3
Query:   96 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            AF      ++ K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    I++VVD+ D D +  +R EL  +L++  L    LLV  NK D P A+S  ++ +Q+GL+S+T R
Sbjct:    4 AFSKLFDRIWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTRR 151          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 51/141 (36.17%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  120 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            +F  +EM + + GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD  D D +  +R ELH +++   +    +L+  NK D P+A+   ++ E++GL  I DR
Sbjct:    8 IFGNKEMRILMRGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 55/169 (32.54%), Postives = 86/169 (50.89%), Query Frame = 3
Query:   99 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            F     S+F  +E  + ++GL NAGKT+++  +  G      IPT+GFN+  V   N+  ++WDLGGQ   R  W  Y     A++YVVD++D D + V++ E H +L +  L G  +L+  NK D P AL    + E + L  I  R+   +         +   +DW
Sbjct:    5 FTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 55/154 (35.71%), Postives = 90/154 (58.44%), Query Frame = 3
Query:   81 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            MGL+ + L    +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ R RS+W  Y R    +++V+D+ D   +  +R  +  +L++  L     LV  NK D PEA+S  ++ E++GL SI +R
Sbjct:    1 MGLYASKL--FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNR 151          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 55/169 (32.54%), Postives = 86/169 (50.89%), Query Frame = 3
Query:   99 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            F     S+F  +E  + ++GL NAGKT+++  +  G      IPT+GFN+  V   N+  ++WDLGGQ   R  W  Y     A++YVVD++D D + V++ E H +L +  L G  +L+  NK D P AL    + E + L  I  R+   +         +   +DW
Sbjct:    5 FTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 3
Query:   99 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            F N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DW
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 3
Query:   99 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            F N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DW
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 3
Query:   99 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            F N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DW
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 3
Query:   99 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            F N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DW
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 3
Query:   99 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            F N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DW
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 172          
The following BLAST results are available for this feature:
BLAST of CX671429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF_AJECA1.474e-2236.24ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF6_XENLA1.474e-2236.17ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF3_ARATH1.474e-2232.54ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF2_YEAST1.474e-2235.71ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF1_BRARP1.474e-2232.54ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARF1_XENLA1.925e-2231.36ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT1.925e-2231.36ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE1.925e-2231.36ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA1.925e-2231.36ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN1.925e-2231.36ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A05-B9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671429 ID=CX671429; Name=CX671429; organism=Citrus sinensis; type=EST; length=774bp
GCAAGAAAAGTTTTTTCGCTTTTTCCCAGCTTTTATACTTCAAAGGCGAA
ACCCTAGCTTCTTATTTTGTCGAATAAAAGATGGGATTATGGGAAGCTTT
TCTCAACTGGCTTCGAAGTCTCTTCTTTAAACAAGAAATGGAGCTATCTT
TGATAGGGCTTCAGAATGCAGGCAAGACATCCCTTGTGAATGTTATCGCA
ACTGGTGGATATAGTGAAGATATGATCCCAACAGTAGGATTTAATATGAG
GAAAGTGACTAAGGGGAATGTCACAATAAAGCTGTGGGATCTTGGAGGCC
AACCACGGTTTCGCAGTATGTGGGAGAGATACTGTCGTGCAGTTTCAGCT
ATTGTTTACGTTGTTGATGCTGCTGATTATGATAACTTGCCTGTGTCAAG
AAGTGAACTCCATGACTTGTTAAGTAAACCCTCGCTGAATGGTATCCCAT
TGCTGGTACTGGGAAACAAGATTGATAAACCAGAAGCCTTGTCTAAAGAG
GATCTGATGGAACAAATGGGGCTGAAGTCCATTACCGATAGAGAAGTTTG
TTGCTACATGATTTCATGCAAAAACTCTACCAACATTGACACGGTTATTG
ATTGGCTTGTAAAGCATTCAAAATCAAAGAGTTGAGTTTCTTCCTCTAGT
TTTGAACTACATGGGAGCCTGTTTTCAACAACTGATTCAGGATGAGTTGA
GTGAGCTGTACTGTTAGTCTGCTCGGGTCAGTCGATGTGTGACCATAGTT
TTTTATTTCGACTTGGCTTTTTAT
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