CX671429

Overview
NameCX671429
Unique NameCX671429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.555e-22
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 3
Query:   99 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            F    +SLF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DW
Sbjct:    5 FEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDW 172          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21
Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  102 LNW----LRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 542
            +NW    L SL    +  +L  +GL NAGKT+L++++     +  + PT+     ++  GNV    +DLGG  + R +W+ Y   V+ IV++VDA D+D  P +++EL  LLS   L  +P ++LGNKID PEA+S+E+L  Q+GL   T +
Sbjct:    4 INWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAI-LQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLYQTTGK 154          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21
Identity = 53/147 (36.05%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 524
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:    8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21
Identity = 53/152 (34.87%), Postives = 93/152 (61.18%), Query Frame = 3
Query:  129 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 581
            K E ++ ++GL +AGKT+++  +  G    D +PTVGFN+  +   G+V++ LWD+GGQ + R+ W+ Y   +  +VYV+D+ D   LP + +EL ++L  P++ G+P LVL NK + P AL   ++  ++GL+    ++ C  + +C   T
Sbjct:   10 KAEAQVVMMGLDSAGKTTILYKLK-GNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLEGF--QKHCWELRACSALT 158          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21
Identity = 50/144 (34.72%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  114 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE 545
            +SLF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    I++VVD+ D + +  +  EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R+
Sbjct:   10 QSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQ 152          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.630e-21
Identity = 53/147 (36.05%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 524
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:    8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.630e-21
Identity = 53/147 (36.05%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 524
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:    8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.630e-21
Identity = 53/147 (36.05%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 524
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:    8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.630e-21
Identity = 53/147 (36.05%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   87 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 524
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:    8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671429 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.630e-21
Identity = 61/170 (35.88%), Postives = 91/170 (53.53%), Query Frame = 3
Query:   99 FLNWLRSLFFKQ-EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 605
            FL  L+ +  K+ EM + L+GL NAGKT+++     G   + + PT+GFN++ +     T+ +WD+GGQ   RS W  Y  +   +V+VVD+AD   L     EL  LL +  L G  LLVL NK D P ALS  ++ E + L+ IT        +S      + + +DW
Sbjct:    3 FLTVLKKMRQKEREMRILLLGLDNAGKTTILKRF-NGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMDW 171          
The following BLAST results are available for this feature:
BLAST of CX671429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF2_BOVIN9.555e-2231.36ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
SAR1_MAGGR1.248e-2138.16Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1B_HUMAN1.248e-2136.05GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
ARL11_MOUSE1.248e-2134.87ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]
ARF1_SCHPO1.248e-2134.72ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
SAR1B_RAT1.630e-2136.05GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG1.630e-2136.05GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_CRIGR1.630e-2136.05GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1B_BOVIN1.630e-2136.05GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
ARL2_DROME1.630e-2135.88ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A05-B9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671429 ID=CX671429; Name=CX671429; organism=Citrus sinensis; type=EST; length=774bp
GCAAGAAAAGTTTTTTCGCTTTTTCCCAGCTTTTATACTTCAAAGGCGAA
ACCCTAGCTTCTTATTTTGTCGAATAAAAGATGGGATTATGGGAAGCTTT
TCTCAACTGGCTTCGAAGTCTCTTCTTTAAACAAGAAATGGAGCTATCTT
TGATAGGGCTTCAGAATGCAGGCAAGACATCCCTTGTGAATGTTATCGCA
ACTGGTGGATATAGTGAAGATATGATCCCAACAGTAGGATTTAATATGAG
GAAAGTGACTAAGGGGAATGTCACAATAAAGCTGTGGGATCTTGGAGGCC
AACCACGGTTTCGCAGTATGTGGGAGAGATACTGTCGTGCAGTTTCAGCT
ATTGTTTACGTTGTTGATGCTGCTGATTATGATAACTTGCCTGTGTCAAG
AAGTGAACTCCATGACTTGTTAAGTAAACCCTCGCTGAATGGTATCCCAT
TGCTGGTACTGGGAAACAAGATTGATAAACCAGAAGCCTTGTCTAAAGAG
GATCTGATGGAACAAATGGGGCTGAAGTCCATTACCGATAGAGAAGTTTG
TTGCTACATGATTTCATGCAAAAACTCTACCAACATTGACACGGTTATTG
ATTGGCTTGTAAAGCATTCAAAATCAAAGAGTTGAGTTTCTTCCTCTAGT
TTTGAACTACATGGGAGCCTGTTTTCAACAACTGATTCAGGATGAGTTGA
GTGAGCTGTACTGTTAGTCTGCTCGGGTCAGTCGATGTGTGACCATAGTT
TTTTATTTCGACTTGGCTTTTTAT
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