CX671428

Overview
NameCX671428
Unique NameCX671428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1575 contig Csv1_Contig1575:171..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.527e-60
Identity = 107/158 (67.72%), Postives = 132/158 (83.54%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + +  S++ELH+LL KP L GIP+LVLGNK D   AL +++L+E+M L +I DRE+CCY ISCK   NID  + W
Sbjct:   19 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 176          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.995e-60
Identity = 107/158 (67.72%), Postives = 131/158 (82.91%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAA  + +  SR+ELH+LL KP L GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK   NID  + W
Sbjct:   19 EEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 176          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.523e-55
Identity = 99/158 (62.66%), Postives = 125/158 (79.11%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            QEMEL+L+GLQ +GKT+LVNVI+ GG+ ED IPT+GFNM+KVTKGNVTIKLWD+GGQPRFRSMWERYCR V+AIV+VVD+AD +    S+  L DL++KP L  IPLLV+ NK D P +   +++++ + L+ I  REVCCY IS KNS NID  +DW
Sbjct:   18 QEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDLRGIVGREVCCYSISAKNSVNIDITLDW 175          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.753e-24
Identity = 56/158 (35.44%), Postives = 89/158 (56.33%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EM + ++GL  AGKT+++  +  G      IPT+GFN+ +V   N+  ++WDLGGQ   R  W  Y     AI+YVVD+AD D + +SR EL  +L +  L G  L VL NK D    L++ ++ + +GL ++ +R +  +  S      +D  +DW
Sbjct:   15 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDW 171          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.143e-23
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + +S+SEL  +L +  L    L+V  NK D  +A++  ++   +GL ++ DR+   +  S    T +D  ++W
Sbjct:   16 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.493e-23
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + +S+SEL  +L +  L    L+V  NK D  +A++  ++   +GL ++ DR+   +  S    T +D  ++W
Sbjct:   16 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.950e-23
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + +S+SEL  +L +  L    L+V  NK D  +A++  ++   +GL ++ DR+   +  S    T +D  ++W
Sbjct:   16 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.950e-23
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + +S+SEL  +L +  L    L+V  NK D  +A++  ++   +GL ++ DR+   +  S    T +D  ++W
Sbjct:   16 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.326e-23
Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = -1
Query:  414 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 824
            +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R+ELH +++   +    +L+  NK D P+A+   ++ E++GL  I DR
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.344e-23
Identity = 51/137 (37.23%), Postives = 81/137 (59.12%), Query Frame = -1
Query:  414 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 824
            +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH +++   +    +L+  NK D P+A+   ++ E++GL  I DR
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
The following BLAST results are available for this feature:
BLAST of CX671428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
ARL8A_MOUSE1.527e-6067.72ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
ARL8B_PONAB1.995e-6067.72ADP-ribosylation factor-like protein 8B OS=Pongo a... [more]
ARL8_DICDI2.523e-5562.66ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARL1_CAEEL8.753e-2435.44ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARL1_HUMAN1.143e-2334.18ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN1.493e-2334.18ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARL1_RAT1.950e-2334.18ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE1.950e-2334.18ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARF3_DROME3.326e-2337.23ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF6_RAT4.344e-2337.23ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A05-B9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671428 ID=CX671428; Name=CX671428; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTAAGCTTTCAAACCACTATTTTATTAAAAAAGCACAGCAAATAC
AGTACATGTTTACAACACAAGGCACACCAATATAGATCTATACATGAAAG
TATGATCACTTGGTATCTCAGCAATTAATACATGGGTGTTCCCAGATTCC
TGATGTAAAACTAAACAAATTATGATTTACGATAAAAAGCCAAGTCGAAA
TAAAAAACTATGGTCACACATCGACTGACCCGAGCAGACTAACAGTACAG
CTCACTCAACTCATCCTGAATCAGTTGTTGAAAACAGGCTCCCATGTAGT
TCAAAACTAGAGGAAGAAACTCAACTCTTTGATTTTGAATGCTTTACAAG
CCAATCAATAACCGTGTCAATGTTGGTAGAGTTTTTGCATGAAATCATGT
AGCAACAAACTTCTCTATCGGTAATGGACTTCAGCCCCATTTGTTCCATC
AGATCCTCTTTAGACAAGGCTTCTGGTTTATCAATCTTGTTTCCCAGTAC
CAGCAATGGGATACCATTCAGCGAGGGTTTACTTAACAAGTCATGGAGTT
CACTTCTTGACACAGGCAAGTTATCATAATCAGCAGCATCAACAACGTAA
ACAATAGCTGAAACTGCACGACAGTATCTCTCCCACATACTGCGAAACCG
TGGTTGGCCTCCAAGATCCCACAGCTTTATTGTGACATTCCCCTTAGTCA
CTTTCCTCATATTAAATCCTACTGTTGGGATCATATCTTCACTATATCCA
CCAGTTGCGATAACATTCACAAGGGATGTCTTGCCTGCATTCTGAAGCCC
TATCAAAGATAGCTCCATTTCTTG
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