CX671428

Overview
NameCX671428
Unique NameCX671428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1575 contig Csv1_Contig1575:171..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.935e-21
Identity = 49/128 (38.28%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  432 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 815
            +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:   27 KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.935e-21
Identity = 49/128 (38.28%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  432 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 815
            +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:   27 KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 6.935e-21
Identity = 50/137 (36.50%), Postives = 84/137 (61.31%), Query Frame = -1
Query:  411 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE 821
            E    ++GL  AGKT+++  +     + + IPT+GFN+  VT   +T+ +WD+GGQ + R++W+ Y    + +V+VVD++D + +P ++ EL  LL++P L    LLV  NK D P A S  +L + + L S+ +RE
Sbjct:   17 ECRTLMLGLDGAGKTTILYKLKLNE-TVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNRE 152          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.058e-21
Identity = 49/128 (38.28%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  432 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 815
            +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:   27 KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.058e-21
Identity = 49/128 (38.28%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  432 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 815
            +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:   27 KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.058e-21
Identity = 49/128 (38.28%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  432 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 815
            +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:   27 KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.058e-21
Identity = 49/128 (38.28%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  432 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 815
            +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+PEA+S+E L E  GL
Sbjct:   27 KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 100.908 bits (250), Expect = 9.058e-21
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +E+ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ   RS W  Y  +   +++VVD+AD   +   + EL  LL +  L G  LL+  NK D P ALS   + E + L SI     C    S     N+   IDW
Sbjct:   15 RELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDW 171          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.058e-21
Identity = 51/137 (37.23%), Postives = 79/137 (57.66%), Query Frame = -1
Query:  414 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 824
            +EM + ++GL  AGKT+++  +     S   IPTVGFN+  VT  N+   +WD+GGQ + R +W  Y      +++VVD+AD + +  +R ELH ++S   +    LLVL NK D P ALS   + + + L  + DR
Sbjct:   20 KEMRILMLGLDAAGKTTILYKLKLN-QSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDR 155          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.183e-20
Identity = 54/153 (35.29%), Postives = 94/153 (61.44%), Query Frame = -1
Query:  369 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 824
            +E ++ +IGL NAGKT+L++++ TG      IPT+  N    T GNV  K +DLGGQ   R +W++Y   + + IV++VD++DY+++  S+SE+HD+L    L+  PLL+LG+K D     ++E+L++ + ++         + +   NS N+
Sbjct:   19 KEAKIVIIGLGNAGKTTLLHLLVTGSLKSH-IPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIRR--------FELGLNNSNNV 162          
The following BLAST results are available for this feature:
BLAST of CX671428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
SAR1B_MOUSE6.935e-2138.28GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1B_HUMAN6.935e-2138.28GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
ARF11_CAEEL6.935e-2136.50ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
SAR1B_RAT9.058e-2138.28GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG9.058e-2138.28GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_CRIGR9.058e-2138.28GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1B_BOVIN9.058e-2138.28GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
ARL2_HUMAN9.058e-2134.18ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARF2_SCHPO9.058e-2137.23Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
SAR1B_DICDI1.183e-2035.29GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A05-B9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671428 ID=CX671428; Name=CX671428; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTAAGCTTTCAAACCACTATTTTATTAAAAAAGCACAGCAAATAC
AGTACATGTTTACAACACAAGGCACACCAATATAGATCTATACATGAAAG
TATGATCACTTGGTATCTCAGCAATTAATACATGGGTGTTCCCAGATTCC
TGATGTAAAACTAAACAAATTATGATTTACGATAAAAAGCCAAGTCGAAA
TAAAAAACTATGGTCACACATCGACTGACCCGAGCAGACTAACAGTACAG
CTCACTCAACTCATCCTGAATCAGTTGTTGAAAACAGGCTCCCATGTAGT
TCAAAACTAGAGGAAGAAACTCAACTCTTTGATTTTGAATGCTTTACAAG
CCAATCAATAACCGTGTCAATGTTGGTAGAGTTTTTGCATGAAATCATGT
AGCAACAAACTTCTCTATCGGTAATGGACTTCAGCCCCATTTGTTCCATC
AGATCCTCTTTAGACAAGGCTTCTGGTTTATCAATCTTGTTTCCCAGTAC
CAGCAATGGGATACCATTCAGCGAGGGTTTACTTAACAAGTCATGGAGTT
CACTTCTTGACACAGGCAAGTTATCATAATCAGCAGCATCAACAACGTAA
ACAATAGCTGAAACTGCACGACAGTATCTCTCCCACATACTGCGAAACCG
TGGTTGGCCTCCAAGATCCCACAGCTTTATTGTGACATTCCCCTTAGTCA
CTTTCCTCATATTAAATCCTACTGTTGGGATCATATCTTCACTATATCCA
CCAGTTGCGATAACATTCACAAGGGATGTCTTGCCTGCATTCTGAAGCCC
TATCAAAGATAGCTCCATTTCTTG
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