CX671428

Overview
NameCX671428
Unique NameCX671428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 51/134 (38.06%), Postives = 83/134 (61.94%), Query Frame = -1
Query:  414 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 815
            +L  +GL NAGKT+L++++     +  + PT      ++  GN     +DLGG  + R +W+ Y   VS IV++VDA D++  P S++EL  LL+   L+ +P L+LGNKID P+A+S+++L  Q+GL   T +
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRVAT-LQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGK 154          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 53/150 (35.33%), Postives = 88/150 (58.67%), Query Frame = -1
Query:  375 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 821
            E ++ ++GL +AGKT+L+  +  G    + +PTVGFN+  +   G+V++ LWD+GGQ   R+ W+ Y      +VYV+D+ D   LP S +EL ++L+ P++ G+P LVL NK + P+AL    +  ++ L+   D   C  +  C   T
Sbjct:   12 EAQVVMMGLDSAGKTTLLYKLK-GHQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLERFQDH--CWELRGCSALT 158          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 50/158 (31.65%), Postives = 87/158 (55.06%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +E  + +IGL  AGK++L+  +  G      IPT+GFN+  +   N+++ +WD+GGQ + R +W+ Y    +A+++VVD+ D + +   + E+ +LL +  L G  +LV  NK D   A++  +++  + L SI DR+      S   S  I    DW
Sbjct:   24 KETRILMIGLDGAGKSTLLYKLKLGDVVST-IPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDW 180          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 49/158 (31.01%), Postives = 86/158 (54.43%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DW
Sbjct:   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.442e-20
Identity = 49/134 (36.57%), Postives = 86/134 (64.18%), Query Frame = -1
Query:  414 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 815
            +L  +GL NAGKT+L++++     +  + PT+     +++ GNV    +DLGG  + R +W+ Y   V+ +V++VDA D++  P +++EL  LLS   L+ +P +VLGNKID P+A+S+++L  Q+G+   T +
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRVAI-LQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQTTGK 154          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.442e-20
Identity = 50/161 (31.06%), Postives = 92/161 (57.14%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC---KNSTNIDTVIDW 824
            ++  + +IGL  AGK++L+  +  G      +PT+GFN+  +   N+++ +WD+GGQ + R++W+ Y    +AI++VVD+ D + +   + E+  LL +  L GI +L+  NK D   A++  ++++ + L SI DR+   Y+  C   K+   I    DW
Sbjct:   24 KQTRILMIGLDGAGKSTLLYKLKLGDIVST-VPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRK--WYVQPCSAIKSPHGIYEGFDW 181          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL6_BOVIN (ADP-ribosylation factor-like protein 6 OS=Bos taurus GN=ARL6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-20
Identity = 47/161 (29.19%), Postives = 95/161 (59.01%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIA-TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL--NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +E+ +  +GL N+GKT+++N +  +   S+D++PT+GF+++K    +++  ++D+ GQ R+R++WE Y +   AI++V+D++D   + V++ EL  LL+ P +    IP+L   NK+D  +AL+   + + + L+ I D+              +   +DW
Sbjct:   16 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIQKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFANKMDLRDALTSVKVSQLLCLEDIKDKPWHICASDAIKGEGLQEGVDW 176          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-20
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V    ++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +L++  L    LLV  NK D P A++  ++ ++ GL S+  R          +   +   +DW
Sbjct:   16 KEMRILMVGLDAAGKTTILYQLKLGEIVTT-IPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-20
Identity = 48/158 (30.38%), Postives = 88/158 (55.70%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P+A++  ++ +++GL S+ +R          +   +   +DW
Sbjct:   16 REMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-20
Identity = 48/158 (30.38%), Postives = 88/158 (55.70%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P+A++  ++ +++GL S+ +R          +   +   +DW
Sbjct:   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDW 172          
The following BLAST results are available for this feature:
BLAST of CX671428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
SAR1_ASPCL2.635e-2038.06Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
ARL11_HUMAN2.635e-2035.33ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARFJ_DICDI2.635e-2031.65ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF1_SOLTU2.635e-2031.01ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
SAR1_CHAGB3.442e-2036.57Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]
ARFH_DICDI3.442e-2031.06ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARL6_BOVIN4.495e-2029.19ADP-ribosylation factor-like protein 6 OS=Bos taur... [more]
ARF1_CATRO4.495e-2031.01ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF12_CAEEL4.495e-2030.38ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR4.495e-2030.38ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A05-B9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671428 ID=CX671428; Name=CX671428; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTAAGCTTTCAAACCACTATTTTATTAAAAAAGCACAGCAAATAC
AGTACATGTTTACAACACAAGGCACACCAATATAGATCTATACATGAAAG
TATGATCACTTGGTATCTCAGCAATTAATACATGGGTGTTCCCAGATTCC
TGATGTAAAACTAAACAAATTATGATTTACGATAAAAAGCCAAGTCGAAA
TAAAAAACTATGGTCACACATCGACTGACCCGAGCAGACTAACAGTACAG
CTCACTCAACTCATCCTGAATCAGTTGTTGAAAACAGGCTCCCATGTAGT
TCAAAACTAGAGGAAGAAACTCAACTCTTTGATTTTGAATGCTTTACAAG
CCAATCAATAACCGTGTCAATGTTGGTAGAGTTTTTGCATGAAATCATGT
AGCAACAAACTTCTCTATCGGTAATGGACTTCAGCCCCATTTGTTCCATC
AGATCCTCTTTAGACAAGGCTTCTGGTTTATCAATCTTGTTTCCCAGTAC
CAGCAATGGGATACCATTCAGCGAGGGTTTACTTAACAAGTCATGGAGTT
CACTTCTTGACACAGGCAAGTTATCATAATCAGCAGCATCAACAACGTAA
ACAATAGCTGAAACTGCACGACAGTATCTCTCCCACATACTGCGAAACCG
TGGTTGGCCTCCAAGATCCCACAGCTTTATTGTGACATTCCCCTTAGTCA
CTTTCCTCATATTAAATCCTACTGTTGGGATCATATCTTCACTATATCCA
CCAGTTGCGATAACATTCACAAGGGATGTCTTGCCTGCATTCTGAAGCCC
TATCAAAGATAGCTCCATTTCTTG
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