CX671427 | Citrus Genome Database

Overview


Name	CX671427
Unique Name	CX671427
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	768

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 59/169 (34.91%), Postives = 96/169 (56.80%), Query Frame = 3

Query:  228 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            L GH+  V  V  S +G++  S S D  +++W   +GK  +   GH   +  VA+S D+  +VSAS D+T+K+W+ + G+C  T++    H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL  S   DG+  +WD A G+
Sbjct:   41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204

HSP 2 Score: 100.908 bits (250), Expect = 8.066e-21
Identity = 69/224 (30.80%), Postives = 116/224 (51.79%), Query Frame = 3

Query:   72 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVW--HLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            LK T+  HT  V+++     N + + ++S DK I +W  +  K EKT       ++GH   + DV  SSD    +S S D  L++WD++ GK  +   GH+  V    F+  +  IVS S D ++++W+   G+C  T+    AH++ VS V F  N     IVS+S+D   ++W+ ++ + L+  +      V+ V  SP+G    +   D  + LWD ++GK
Sbjct:   37 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247

HSP 3 Score: 92.0485 bits (227), Expect = 3.747e-18
Identity = 74/232 (31.90%), Postives = 115/232 (49.57%), Query Frame = 3

Query:   30 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLS-VAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 713
            + T  I  ++ G  LK T++ H++ V         S++IV+ S D+S+ +W +    KT G   + L  HS  V  V  + DG   +S S+DG  R+WD A G+  +  +      +S V FS + + I++A+ D T+KLW+ + G+C  T   G  + ++     FS  T    IVS S D  V +WNL   ++   L GHT  V + A  P  ++ AS     D  I LW
Sbjct:  108 DKTLKIWDVSSGKCLK-TLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDV----KT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 59/169 (34.91%), Postives = 96/169 (56.80%), Query Frame = 3

Query:  228 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            L GH+  V  V  S +G++  S S D  +++W   +GK  +   GH   +  VA+S D+  +VSAS D+T+K+W+ + G+C  T++    H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL  S   DG+  +WD A G+
Sbjct:   41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204

HSP 2 Score: 100.908 bits (250), Expect = 8.066e-21
Identity = 69/224 (30.80%), Postives = 116/224 (51.79%), Query Frame = 3

Query:   72 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVW--HLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            LK T+  HT  V+++     N + + ++S DK I +W  +  K EKT       ++GH   + DV  SSD    +S S D  L++WD++ GK  +   GH+  V    F+  +  IVS S D ++++W+   G+C  T+    AH++ VS V F  N     IVS+S+D   ++W+ ++ + L+  +      V+ V  SP+G    +   D  + LWD ++GK
Sbjct:   37 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247

HSP 3 Score: 92.0485 bits (227), Expect = 3.747e-18
Identity = 74/232 (31.90%), Postives = 115/232 (49.57%), Query Frame = 3

Query:   30 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLS-VAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 713
            + T  I  ++ G  LK T++ H++ V         S++IV+ S D+S+ +W +    KT G   + L  HS  V  V  + DG   +S S+DG  R+WD A G+  +  +      +S V FS + + I++A+ D T+KLW+ + G+C  T   G  + ++     FS  T    IVS S D  V +WNL   ++   L GHT  V + A  P  ++ AS     D  I LW
Sbjct:  108 DKTLKIWDVSSGKCLK-TLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDV----KT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 59/169 (34.91%), Postives = 96/169 (56.80%), Query Frame = 3

Query:  228 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            L GH+  V  V  S +G++  S S D  +++W   +GK  +   GH   +  VA+S D+  +VSAS D+T+K+W+ + G+C  T++    H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL  S   DG+  +WD A G+
Sbjct:   41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204

HSP 2 Score: 100.908 bits (250), Expect = 8.066e-21
Identity = 69/224 (30.80%), Postives = 116/224 (51.79%), Query Frame = 3

Query:   72 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVW--HLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            LK T+  HT  V+++     N + + ++S DK I +W  +  K EKT       ++GH   + DV  SSD    +S S D  L++WD++ GK  +   GH+  V    F+  +  IVS S D ++++W+   G+C  T+    AH++ VS V F  N     IVS+S+D   ++W+ ++ + L+  +      V+ V  SP+G    +   D  + LWD ++GK
Sbjct:   37 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247

HSP 3 Score: 92.0485 bits (227), Expect = 3.747e-18
Identity = 74/232 (31.90%), Postives = 115/232 (49.57%), Query Frame = 3

Query:   30 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLS-VAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 713
            + T  I  ++ G  LK T++ H++ V         S++IV+ S D+S+ +W +    KT G   + L  HS  V  V  + DG   +S S+DG  R+WD A G+  +  +      +S V FS + + I++A+ D T+KLW+ + G+C  T   G  + ++     FS  T    IVS S D  V +WNL   ++   L GHT  V + A  P  ++ AS     D  I LW
Sbjct:  108 DKTLKIWDVSSGKCLK-TLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDV----KT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 64/196 (32.65%), Postives = 109/196 (55.61%), Query Frame = 3

Query:  153 ASRDKSIIVWHLTKEE--KTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            A R +S++     +EE  K     R  L GHS  +  V  S +G++  S + D  + +W   +G   +   GH+ ++  VA+S D+ ++VSAS D+T+K+W+   G+C  T++    H+++V C  F+P +    IVS S+D +VK+W +   K   TL+ H+  ++ V  + +GSL  SG  DG+  +WD A G+
Sbjct:    8 AERAQSLLSAPRREEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLK---GHSDFVFCCDFNPPS--NLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQ 198

HSP 2 Score: 97.4413 bits (241), Expect = 8.918e-20
Identity = 65/222 (29.28%), Postives = 111/222 (50.00%), Query Frame = 3

Query:   72 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY-VNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            L+ T+  H+  ++++     N + + +++ D  II+W         G  ++ L GHS  + DV  SSD    +S S D  L++WD+  GK  +   GH+  V    F+  +  IVS S D ++K+W    G+C  T+    AH++ +S V F+ N     IVS S+D   ++W+ ++ +   TLA      V+ V  SP+G    +   D  + LWD + G+
Sbjct:   31 LRLTLAGHSAAISSVKFS-PNGEWLASSAADALIIIWGAYD-----GNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLS---AHSDPISAVNFNCNG--SLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGR 241

HSP 3 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 76/241 (31.54%), Postives = 119/241 (49.38%), Query Frame = 3

Query:    3 NSRGEKKNTESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLS-VAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 713
            +SR    + + T  +  M  G  LK T++ H+D V         S++IV+ S D+S+ +W    E KT G   + L+ HS  +  V  + +G   +SGS+DG  R+WD A G+  R         +S V FS + + I++A+ D T+KLW+ + G C  T   G  + ++     FS  T +  +VS S D  V +WNL   ++   L GHT  V + A  P  ++ AS     D  I +W
Sbjct:   93 SSRLVSASDDKTLKVWDMRSGKCLK-TLKGHSDFVFCCDFN-PPSNLIVSGSFDESVKIW----EVKT-GKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKT-YTGHKNEKYCLFASFSV-TGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVW 324

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 68/210 (32.38%), Postives = 104/210 (49.52%), Query Frame = 3

Query:   90 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 719
            AH   V+++     +  ++ T   D  + +W + K           LTGH+  V+ V  ++  +  ++GS  G LR+WDL   K  R  +GH  +V S+ F      + S S D  IKLW+     K  +     HT+ V C+RFSP+     + SAS D +VK+W+L+  K+ A L+ H G VN +   P+  L ASG  D  +  WDL
Sbjct:   18 AHGCSVSSVVLGRSSGRLVATGGDDCRVHLWSVNKPNCIMS-----LTGHTTPVESVRFNNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDV--RRKGCVFRYKGHTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218

HSP 2 Score: 96.6709 bits (239), Expect = 1.521e-19
Identity = 65/206 (31.55%), Postives = 99/206 (48.06%), Query Frame = 3

Query:  105 VTAIATPIDN------SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 701
            +T   TP+++       ++IV  S+  S+ +W L   +       R L GH   V  +     G+F  SGS D  ++LWD+       R+ GHT+ V  + FS D + + SAS D ++KLW+ T G+    + E   H   V+ + F PN  +  + S S DRTV+ W+L   +L     G T  V  +  S DG     GGKD +
Sbjct:   59 LTGHTTPVESVRFNNSEELIVAGSQSGSLRIWDLEAAK-----ILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE---HKGPVNIIEFHPN--EYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKDSL 254

HSP 3 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 50/171 (29.24%), Postives = 75/171 (43.86%), Query Frame = 3

Query:  222 RRLTGHSHFVQDVVLS-SDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            + +  H   V  VVL  S G+   +G  D  + LW + +        GHT  V SV F+     IV+ S+  ++++W+   E    ++    H   VS + F P      + S S D  +K+W++          GHT  V  +  SPDG   AS   D  + LWDL  GK
Sbjct:   14 QEIVAHGCSVSSVVLGRSSGRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTPVESVRFNNSEELIVAGSQSGSLRIWDL--EAAKILRTLMGHKANVSSLDFHP--YGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGK 180

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.962e-23
Identity = 68/210 (32.38%), Postives = 104/210 (49.52%), Query Frame = 3

Query:   90 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 719
            AH   V+++     +  ++ T   D  + +W + K           LTGH+  V+ V  ++  +  ++GS  G LR+WDL   K  R  +GH  +V S+ F      + S S D  IKLW+     K  +     HT+ V C+RFSP+     + SAS D +VK+W+L+  K+ A L+ H G VN +   P+  L ASG  D  +  WDL
Sbjct:   18 AHGSSVSSVVLGKSSGRLVATGGDDCRVNLWSVNKPNCIMS-----LTGHTTPVESVRFNNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDV--RRKGCVFRYKGHTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218

HSP 2 Score: 94.3597 bits (233), Expect = 7.550e-19
Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 3

Query:  105 VTAIATPIDN------SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 701
            +T   TP+++       ++IV  S+  S+ VW L   +       R L GH   V  +     G F  SGS D  ++LWD+       R+ GHT+ V  + FS D + + SAS D ++KLW+ T G+    + E   H   V+ + F PN  +  + S S DRTV+ W+L   +L     G T  V  +  S DG     GG+D +
Sbjct:   59 LTGHTTPVESVRFNNAEELIVAGSQSGSLRVWDLEAAK-----ILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE---HKGPVNIIEFHPN--EYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFSSDGGCIFCGGRDAL 254

HSP 3 Score: 71.633 bits (174), Expect = 5.240e-12
Identity = 49/171 (28.65%), Postives = 74/171 (43.27%), Query Frame = 3

Query:  222 RRLTGHSHFVQDVVLS-SDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            + +  H   V  VVL  S G+   +G  D  + LW + +        GHT  V SV F+     IV+ S+  ++++W+   E    ++    H   V  + F P      + S S D  +K+W++          GHT  V  +  SPDG   AS   D  + LWDL  GK
Sbjct:   14 QEIVAHGSSVSSVVLGKSSGRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTPVESVRFNNAEELIVAGSQSGSLRVWDL--EAAKILRTLMGHKANVCSLDFHP--YGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGK 180

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 68/210 (32.38%), Postives = 100/210 (47.62%), Query Frame = 3

Query:   90 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 719
            AH+  V+++     +  ++ T   D  + +W ++K           LTGH+  V  +  +S  +  ++GS  G LRLWDL   K  R  +GH   + S+ F      + S S D  IKLW+     K  +     HT+ V C+ FSP+     + SAS D TVK+W+L   K+      HT  VN V   P+  L ASG  D  + LWDL
Sbjct:   18 AHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMS-----LTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDV--RRKGCVFRYKGHTQAVRCLAFSPDG--KWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDL 218

HSP 2 Score: 105.916 bits (263), Expect = 2.507e-22
Identity = 67/205 (32.68%), Postives = 103/205 (50.24%), Query Frame = 3

Query:   81 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD 695
            ++  HT  V  I     + + +V  S   S+ +W L   +       R L GH   +  +     G++  SGS D  ++LWD+       R+ GHT+ V  +AFS D + + SAS D T+KLW+ +      I E  +HT  V+ V+F PN  +  + S S DRTVK+W+L    +  +  G TG V +V  +PDGS   SG ++
Sbjct:   58 SLTGHTSAVGCIQFN-SSEERVVAGSLSGSLRLWDLEAAK-----ILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLI--AGKMITEFTSHTSAVNVVQFHPN--EYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGSEN 252

HSP 3 Score: 77.0258 bits (188), Expect = 1.247e-13
Identity = 49/177 (27.68%), Postives = 80/177 (45.20%), Query Frame = 3

Query:  222 RRLTGHSHFVQDVVLS-SDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKDSTRST 749
            + +  HS  V  +VL  S G+   +G  D  + +W +++        GHT  V  + F+    ++V+ S   +++LW+   E    ++    H   +S + F P  +   + S S D  +K+W++          GHT  V  +A SPDG   AS   D  + LWDL  GK  T  T
Sbjct:   14 QEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDL--EAAKILRTLMGHKASISSLDFHP--MGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFT 186

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.275e-22
Identity = 72/224 (32.14%), Postives = 119/224 (53.12%), Query Frame = 3

Query:   72 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVW--HLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            LK T+  HT  V+A+     N + + ++S DK I +W  +  K EKT       ++GH   + DV  SSD +  +SGS D  L++W+L+ GKS +   GH+  V    F+  +  IVS S D ++++W+   G+C  T+    AH++ VS V F  N     IVS+S+D   ++W+ ++ + L+  +      V+ V  SP+G    +   D  + LWD ++GK
Sbjct:   64 LKFTLAGHTKAVSAVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 274

HSP 2 Score: 90.5077 bits (223), Expect = 1.090e-17
Identity = 71/232 (30.60%), Postives = 114/232 (49.14%), Query Frame = 3

Query:   30 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLS-VAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 713
            + T  + +++ G  LK T++ H++ V         S++IV+ S D+S+ +W +       G   + L  HS  V  V  + DG   +S S+DG  R+WD A G+  +  +      +S V FS + + I++A+ D T+KLW+ + G+C  T   G  + ++     FS  T    IVS S D  V +WNL + ++   L GHT  V   A  P  ++ AS     D  I LW
Sbjct:  135 DKTLKVWELSTGKSLK-TLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVRT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLW 357

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22
Identity = 67/223 (30.04%), Postives = 110/223 (49.33%), Query Frame = 3

Query:   69 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG-YVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            +LK T++ H   ++++    D    + +AS DK+I +W         G   R L GH   + D+  S D +   S S D  +++WD+  GK  +   GH + V  V+F+  +  IVS S D  +++W+   GEC   I    AH++ V+ V F  N     +VS S+D TV++W+ +  +L  T++   G  V+ V  SP+G    +G  D  + LW     K
Sbjct:   37 ILKYTLKGHLKSISSVKFSPDGK-WLASASADKTIKIWGAYD-----GKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMI---SAHSDPVTGVHF--NRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNK 248

HSP 2 Score: 93.2041 bits (230), Expect = 1.682e-18
Identity = 75/258 (29.07%), Postives = 113/258 (43.80%), Query Frame = 3

Query:   81 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPN-------TLQPT-------------------------------------IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 713
            T+  H + ++ IA   D S +I +AS DK+I +W +       G   + L GH  +V  V  +      +SGS+D  +R+WD+  G+  +    H+  V  V F+ D   +VS S D T+++W+T  G+   TI   D     VS V+FSPN       TL  T                                     IV+ S D  + ++NL   ++  TLAGH   V TVA  P  ++ ASG   KD  + +W
Sbjct:   83 TLEGHKEGISDIAWSQD-SKLICSASDDKTIKIWDVES-----GKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKE--VSFVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKYCIFSTFSVTCGKWIVTGSEDNLIYIYNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIW 332

[Close]

BLAST of CX671427 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22
Identity = 74/246 (30.08%), Postives = 111/246 (45.12%), Query Frame = 3

Query:   81 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFS-------PNTLQPT---------------------IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            T++ HT+ V  I       +++ + S D +I +W      +TY   +  L GH H V  V  +  G   +S S D  +++W+ A G   +  VGH   V  +  S D   I S S D+TIK WN + GEC  T +E   H+  V C+ FS       P +L  T                     + + S D+T+K+W L+  +  AT  GH  +V  V   P G    S G D  I +WD+A+G+
Sbjct:  143 TLKGHTNAVQDIDFD-KTGNLLASCSADLTIKLWDF----QTYDCVKT-LHGHDHNVSCVRFTPSGDQLISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYRE---HSHVVECLAFSTANIIDIPGSLLSTPEGKSKVKQGPGGNLVGQCGYLATGSRDKTIKIWELATGRCLATYIGHDNWVRAVRFHPCGKFLLSVGDDKTIRVWDIAQGR 379

HSP 2 Score: 102.064 bits (253), Expect = 3.621e-21
Identity = 59/169 (34.91%), Postives = 85/169 (50.30%), Query Frame = 3

Query:  228 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 731
            LTGH + +  V         +S S D  +++WD   G+  R   GHT  V  + F      + S S D TIKLW+    +C  T+     H   VSCVRF+P+  Q  ++S+S D+T+KVW  +      TL GH  +V  + VS DGS  AS   D  I  W++ +G+
Sbjct:  102 LTGHRNCINSVKFHPSFSLMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKTGNLLASCSADLTIKLWDFQTYDCVKTLH---GHDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGE 265

HSP 3 Score: 87.0409 bits (214), Expect = 1.205e-16
Identity = 66/246 (26.83%), Postives = 109/246 (44.31%), Query Frame = 3

Query:   81 TMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDN------------------------------RQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 719
            T+  H   V+ +  TP  + D ++++SRDK+I VW     E   G   + L GH  +V+ + +S DG    S S D  ++ W++ +G+    +  H+  V  +AFS  N                                + + SRD+TIK+W    G C  T      H  WV  VRF P      ++S   D+T++VW+++  +   T+   HT +++ +         A+GG D VI +W L
Sbjct:  185 TLHGHDHNVSCVRFTP--SGDQLISSSRDKTIKVW-----EAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECLAFSTANIIDIPGSLLSTPEGKSKVKQGPGGNLVGQCGYLATGSRDKTIKIWELATGRCLATYI---GHDNWVRAVRFHP--CGKFLLSVGDDKTIRVWDIAQGRCIKTINEAHTHFISCLDFCLHNPHIATGGVDDVIKVWKL 418

The following BLAST results are available for this feature:

BLAST of CX671427 vs. ExPASy Swiss-Prot

BLAST of CX671427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421


Match Name	E-value	Identity	Description
WDR5_MOUSE	1.736e-23	34.91	WD repeat-containing protein 5 OS=Mus musculus GN=...	[more]
WDR5_HUMAN	1.736e-23	34.91	WD repeat-containing protein 5 OS=Homo sapiens GN=...	[more]
WDR5_BOVIN	1.736e-23	34.91	WD repeat-containing protein 5 OS=Bos taurus GN=WD...	[more]
WDR5B_MOUSE	1.736e-23	32.65	WD repeat-containing protein 5B OS=Mus musculus GN...	[more]
KTNB1_XENLA	2.268e-23	32.38	Katanin p80 WD40-containing subunit B1 OS=Xenopus ...	[more]
KTNB1_XENTR	2.962e-23	32.38	Katanin p80 WD40-containing subunit B1 OS=Xenopus ...	[more]
KTNB1_DANRE	6.598e-23	32.38	Katanin p80 WD40-containing subunit B1 OS=Danio re...	[more]
WDS_DROME	3.275e-22	32.14	Protein will die slowly OS=Drosophila melanogaster...	[more]
WDR5_DICDI	5.586e-22	30.04	WD repeat-containing protein 5 homolog OS=Dictyost...	[more]
LIS1_DICDI	5.586e-22	30.08	Lissencephaly-1 homolog OS=Dictyostelium discoideu...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_11A04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A04-B7-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX671427 ID=CX671427; Name=CX671427; organism=Citrus sinensis; type=EST; length=768bp
CTAACAGCAGGGGGGAAAAAAAAAATACCGAAAGTACATTTGCTATCGGA
AAAATGGCTGAAGGTCTCGTTCTCAAAGGAACCATGCGCGCCCACACCGA
CATGGTGACGGCGATCGCCACCCCAATCGACAACTCTGACATGATCGTGA
CGGCCTCGCGTGACAAGTCCATCATTGTCTGGCACCTCACTAAGGAGGAA
AAGACCTACGGCGTTGCGCGCCGTCGTTTGACCGGCCACTCTCACTTCGT
GCAGGACGTCGTCCTCTCCTCGGACGGCCAGTTCGCTCTCTCCGGCTCCT
GGGACGGCGAGCTCCGCCTCTGGGATTTGGCCGAGGGAAAATCCGCCCGC
AGGTTCGTCGGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGA
CAACCGTCAGATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGA
ACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGGGAGACGCTCACACT
GAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTAT
CGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACT
GCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTC
GCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGT
GATTCTGTTGTGGGATTTGGCTGAGGGAAAAGACTCTACTCGCTCGACGC
TGGTGCTGTCATTCACGC