CX671426
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11 Identity = 50/202 (24.75%), Postives = 82/202 (40.59%), Query Frame = -3 Query: 234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQ-SIKIWDLESKSIVEDLK---------------------VDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 764 H V C +F PN T+ SA +DR + +WN+ +C ATL GH+G V + + DGS+ S D + +WD G+R+ L C+ R +C ++ ++K+WD+ K+ ++ + +D T L+ S +GS L S D +RVW + Sbjct: 66 HEGEVYCCKFHPNG--STLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDV 265
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11 Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = -3 Query: 393 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDL 764 HT V VRF N + IV+ S ++++W+L K+ TL GH V+++ P G ASG D I LWD+ ++ + L FSP+ WL +A+ + S+K+WDL + ++ +L Sbjct: 62 HTTPVESVRF--NNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAEL 185
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11 Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = -3 Query: 228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW-----------LCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764 HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + + +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 74 HTDWVNDIILCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQTGTVIISGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKSLLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11 Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = -3 Query: 423 TIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG---KRLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWD 824 ++KLW+ G C T+ HT +V C F + S S+D T+++W++ + + + H+ V + A S DGS+ + DG+I LWD G K L+ D+ V A F+PN +Y LC + K+WD Sbjct: 105 SLKLWDAETGACLRTLT---GHTNYVFCCNFD-GAAGHLLASGSFDETLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFA-AFTPNAKYVLCNTLDGRAKLWD 238
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11 Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = -3 Query: 393 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDL 764 HT V VRF N + IV+ S +++VW+L K+ TL GH V ++ P G ASG D I LWD+ ++ + L FSP+ WL +A+ + S+K+WDL + ++ +L Sbjct: 62 HTTPVESVRF--NNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAEL 185
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: YCW2_YEAST (WD repeat-containing protein YCR072C OS=Saccharomyces cerevisiae GN=YCR072C PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11 Identity = 47/160 (29.38%), Postives = 75/160 (46.88%), Query Frame = -3 Query: 240 IVSASWDRTVKVWN-LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 710 +V+AS D T+ +WN L + K A + GH VN VA SPDG S D I LWD +GK + + +V S R + + + ++K+WD+ ++ + DL +Y +++WSVDG + SG D ++R+W Sbjct: 374 MVTASDDYTMFLWNPLKSTKPIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQVAWSSDCRLLVSCSKDTTLKVWDVRTRKLSVDLP------------------GHKDEVY--TVDWSVDGKRVCSGGKDKMVRLW 513
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBB1_XENLA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Xenopus laevis GN=gnb1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11 Identity = 51/179 (28.49%), Postives = 83/179 (46.37%), Query Frame = -3 Query: 240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 764 HT ++SC RF + I+++S D T +W++ + T GHTG V +++++PD SG D LWD+ EG R + I+A+CF PN + + + + +++DL + ++L V NI C TS+ +S G L +GY D VW Sbjct: 142 HTGYLSCCRFLDDN---QIITSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDSRCFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMV-----------------YSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVW 297
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: APAF_HUMAN (Apoptotic protease-activating factor 1 OS=Homo sapiens GN=APAF1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11 Identity = 41/158 (25.95%), Postives = 75/158 (47.47%), Query Frame = -3 Query: 393 IKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--------------DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 821 +K+WN++ GE +T E H+E V+C F+ ++ + + S D +K+W+L+ + R T+ GHT VN SPD L AS DG + LWD S+ D ++ +S + + A + I ++D+ + ++ ++ Sbjct: 681 VKIWNSMTGELVHTYDE---HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEI 835 The following BLAST results are available for this feature:
BLAST of CX671426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671426 ID=CX671426; Name=CX671426; organism=Citrus sinensis; type=EST; length=826bpback to top |