CX671426

Overview
NameCX671426
Unique NameCX671426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671426_ssr335 microsatellite CX671426_ssr335:335..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:454..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.427e-15
Identity = 56/202 (27.72%), Postives = 98/202 (48.51%), Query Frame = -3
Query:  234 TIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDG-STLFSGYTDGVIRVWGI 824
            T+K+W+   G+C  T++    H+++V C  F+P +    IVS S+D +VK+W +   K   TL+ H+  ++ V  + +GSL  SG  DG+  +WD A G+ L +L  +    +  + FSPN +Y L A  + ++K+WD      ++                           YC   ++SV G   + SG  D ++ +W +
Sbjct:  104 TLKVWDMRSGKCLKTLK---GHSDFVFCCDFNPPS--NLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLK------------------TYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNL 282          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.655e-14
Identity = 51/181 (28.18%), Postives = 86/181 (47.51%), Query Frame = -3
Query:  234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 764
            H  +V C  F+P +    +VS S+D +V++W++       TL  H+  V+ V+ + DGSL ASG  DG++ +WD A G+ + +L  D    +  + FSPN +Y L +  + ++K+WD      ++                         + YC   N+SV G   + SG  D  I +W +
Sbjct:  170 HNNYVFCCNFNPQS--SLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQ------------------YTGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNL 330          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.822e-14
Identity = 65/199 (32.66%), Postives = 90/199 (45.23%), Query Frame = -3
Query:  240 TIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSV--DGSTLFSGYTDGVIRVW 824
            TI++WN    EC  +I  G  HT+ V C+ F    L    VS S D TVK+W+ S  K R TL GHTG VN+V +  D  L  SG  D  I +W L     L++  A    + +L  + +R + C + + +IK WD+E K  V  L   +                           W +  D   L SG  DGV++VW
Sbjct:  334 TIRIWNYRTSEC-ISILHG--HTDSVLCLTFDSTLL----VSGSADCTVKLWHFSGGK-RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSC-SLDGTIKQWDIEKKKCVHTLFGHIEGV------------------------WEIAADHLRLISGAHDGVVKVW 499          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBB3_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Mus musculus GN=Gnb3 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.211e-14
Identity = 56/184 (30.43%), Postives = 87/184 (47.28%), Query Frame = -3
Query:  240 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 779
            +E  AHT ++SC RF  +     IV++S D T  +W++   + +    GHTG   ++AVSPD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +     +                    +I C  TS+ +S+ G  LF+GY D    VW
Sbjct:  137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSQE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNVW 297          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBB3_RAT (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Rattus norvegicus GN=Gnb3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 56/184 (30.43%), Postives = 87/184 (47.28%), Query Frame = -3
Query:  240 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 779
            +E  AHT ++SC RF  +     IV++S D T  +W++   + +    GHTG   ++AVSPD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +     +                    +I C  TS+ +S+ G  LF+GY D    VW
Sbjct:  137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSHE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNVW 297          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBB3_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Homo sapiens GN=GNB3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = -3
Query:  240 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 779
            +E  AHT ++SC RF  +     IV++S D T  +W++   + +    GHTG   ++AVSPD +L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +                         ++I C  TS+ +S+ G  LF+GY D    VW
Sbjct:  137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQEL--------------------ICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVW 297          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBB3_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Canis familiaris GN=GNB3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.401e-13
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = -3
Query:  240 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 779
            +E  AHT ++SC RF  +     IV++S D T  +W++   + +    GHTG   ++AVSPD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +     +                    +I C  TS+ +S+ G  LF+GY D    +W
Sbjct:  137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSDE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNIW 297          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROPS (WD repeat-containing protein 48 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21511 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.120e-13
Identity = 62/211 (29.38%), Postives = 97/211 (45.97%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRSESSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROPE (WD repeat-containing protein 48 homolog OS=Drosophila persimilis GN=GL16745 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.120e-13
Identity = 62/211 (29.38%), Postives = 97/211 (45.97%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRSESSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROMO (WD repeat-containing protein 48 homolog OS=Drosophila mojavensis GN=GI19644 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.322e-13
Identity = 62/211 (29.38%), Postives = 97/211 (45.97%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRTEANEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
The following BLAST results are available for this feature:
BLAST of CX671426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
WDR5B_MOUSE7.427e-1527.72WD repeat-containing protein 5B OS=Mus musculus GN... [more]
TG125_CAEEL1.655e-1428.18WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
POF1_SCHPO2.822e-1432.66F-box/WD repeat-containing protein pof1 OS=Schizos... [more]
GBB3_MOUSE8.211e-1430.43Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB3_RAT1.072e-1330.43Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB3_HUMAN1.072e-1330.43Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB3_CANFA1.401e-1329.89Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
WDR48_DROPS3.120e-1329.38WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROPE3.120e-1329.38WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROMO5.322e-1329.38WD repeat-containing protein 48 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A04-B7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671426 ID=CX671426; Name=CX671426; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATAAGCCAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCGCC
GAGCGTGTTCCACAACTTGATCGTAC
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