CX671426

Overview
NameCX671426
Unique NameCX671426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROAN (WD repeat-containing protein 48 homolog OS=Drosophila ananassae GN=GF12420 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.322e-13
Identity = 62/211 (29.38%), Postives = 97/211 (45.97%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRTESNEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = -3
Query:  393 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDL 824
            T+ LW           EG  H   V  V F P+     +VSAS+D T ++W++          GH+  + ++A  PDGSL +SGG D +  +WDL  GK +  LD     I A+ +SPN Y L  ++ + ++KIWDL   S+   +
Sbjct:  246 TVCLWKASQSTPLLRLEG--HLARVGRVAFHPSG--DYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTI 387          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D  L  SG  D  + +W+L+ GK L +L   +     C F+P    + + + ++S++IWD+ +   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   71 HTKAVSAVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 225          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROVI (WD repeat-containing protein 48 homolog OS=Drosophila virilis GN=GJ15009 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 62/211 (29.38%), Postives = 97/211 (45.97%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRTESNDKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROGR (WD repeat-containing protein 48 homolog OS=Drosophila grimshawi GN=GH21936 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 62/211 (29.38%), Postives = 97/211 (45.97%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRTESNEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = -3
Query:  390 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLK 764
            HT WV C +FSP+     IVS S D+T+K+W+ +N +     +   G+ N V  +P G+  AS G D  + +WD+   K L  Y + +G V + + F P+  Y + A+++ ++KI DL    ++  L+
Sbjct:  143 HTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGV-NCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQ 267          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = -3
Query:  390 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLK 764
            HT WV C +FSP+     IVS S D+T+K+W+ +N +     +   G+ N V  +P G+  AS G D  + +WD+   K L  Y + +G V + + F P + Y + A+++ ++KI DL    ++  L+
Sbjct:  143 HTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGV-NCISFHPSDNYLVTASSDGTLKILDLLEGRLIYTLQ 267          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 57/200 (28.50%), Postives = 90/200 (45.00%), Query Frame = -3
Query:  234 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 824
            +I+ W+        + +G A+  W   +  SP +L     S S DRT ++W+          AGH   V+ V   P+ +  A+G  D  + LW   +G   RL++   G V+ +L FSPN +Y   A  +Q +K+WDL S ++ ++L+                      NI  TSL +S D   + S   D  +RVW I
Sbjct:  365 SIRYWDLGSFTNTVLYQGHAYPVWD--LDISPYSLY--FASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELR------------------GHTDNI--TSLTFSPDSGLIASASMDNSVRVWDI 539          

HSP 2 Score: 71.2478 bits (173), Expect = 7.685e-12
Identity = 46/140 (32.86%), Postives = 75/140 (53.57%), Query Frame = -3
Query:  414 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV--IHALCFSPNRYWLCAAT-EQSIKIWDLES 824
            T +LW+   +  Y ++    H   V CV+F PN+    + + S D+TV++W+           GH G V ++A SP+G   AS G+D  + LWDLA G  LY    G    I +L FSP+   + +A+ + S+++WD+ +
Sbjct:  407 TARLWSF--DRTYPLRIYAGHLADVDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG-TLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRN 541          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROYA (WD repeat-containing protein 48 homolog OS=Drosophila yakuba GN=GE13034 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.186e-12
Identity = 61/211 (28.91%), Postives = 97/211 (45.97%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROER (WD repeat-containing protein 48 homolog OS=Drosophila erecta GN=GG22678 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.186e-12
Identity = 61/211 (28.91%), Postives = 97/211 (45.97%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
The following BLAST results are available for this feature:
BLAST of CX671426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
WDR48_DROAN5.322e-1329.38WD repeat-containing protein 48 homolog OS=Drosoph... [more]
YIDC_SCHPO6.951e-1333.56Uncharacterized WD repeat-containing protein C227.... [more]
WDS_DROME6.951e-1327.12Protein will die slowly OS=Drosophila melanogaster... [more]
WDR48_DROVI6.951e-1329.38WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROGR6.951e-1329.38WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WD51B_HUMAN6.951e-1332.81WD repeat-containing protein 51B OS=Homo sapiens G... [more]
WD51B_PONAB9.079e-1332.81WD repeat-containing protein 51B OS=Pongo abelii G... [more]
TAF5L_HUMAN9.079e-1328.50TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
WDR48_DROYA1.186e-1228.91WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROER1.186e-1228.91WD repeat-containing protein 48 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A04-B7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671426 ID=CX671426; Name=CX671426; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATAAGCCAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCGCC
GAGCGTGTTCCACAACTTGATCGTAC
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