CX671426

Overview
NameCX671426
Unique NameCX671426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671426_ssr335 microsatellite CX671426_ssr335:335..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:454..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROSI (WD repeat-containing protein 48 homolog OS=Drosophila simulans GN=GD25924 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 61/211 (28.91%), Postives = 95/211 (45.02%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD  +   +  L+                     +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRIMKLR------------------GHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROSE (WD repeat-containing protein 48 homolog OS=Drosophila sechellia GN=GM20456 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 61/211 (28.91%), Postives = 95/211 (45.02%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD  +   +  L+                     +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRIMKLR------------------GHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: Y1491_SYNY3 (Uncharacterized WD repeat-containing protein sll1491 OS=Synechocystis sp. (strain PCC 6803) GN=sll1491 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 55/200 (27.50%), Postives = 93/200 (46.50%), Query Frame = -3
Query:  234 TIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 824
            TI++W    G    T+ +    T   + V F+P+  Q    +   DRT+K W+ +  +L  T     G++N +AV+PDG     G     +  W+LA+ K L+S+   ++ I+ +  SPN  W+  A  E +I I+DL +   V  L+                        +  SL +S DG+TL+SG  D  +++W +
Sbjct:  168 TIRIWERASGNLIQTLADNLGPT---TSVVFTPDGSQFITGAIGQDRTIKFWDANTFELLGTSPQQPGFINGLAVTPDGRKLV-GAVRNFVKAWNLADAKELFSVRGPSLEINTIAVSPNNRWVATANKEGTIMIFDLANGKQVTTLR--------------------GHQGWVLSLAFSPDGNTLYSGAEDKTVKIWDL 343          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DROME (WD repeat-containing protein 48 homolog OS=Drosophila melanogaster GN=CG9062 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 61/211 (28.91%), Postives = 97/211 (45.97%), Query Frame = -3
Query:  228 IKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   52 IRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRRMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.641e-12
Identity = 56/200 (28.00%), Postives = 88/200 (44.00%), Query Frame = -3
Query:  234 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 824
            +I+ W+        + +G A+  W   V  SP +L     S S DRT ++W+          AGH   V+ V   P+ +  A+G  D  + LW   +G   RL++   G V+ +L FSPN +Y   A  +Q +K+WDL S ++ ++L+                          TSL +S D   + S   D  +RVW I
Sbjct:  365 SIRYWDLGSFTNTVLYQGHAYPVWD--VDISPFSLY--FASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELR--------------------GHTDSITSLAFSPDSGLIASASMDNSVRVWDI 539          

HSP 2 Score: 71.633 bits (174), Expect = 5.885e-12
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = -3
Query:  414 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLES 824
            T +LW+   +  Y ++    H   V CV+F PN+    + + S D+TV++W+           GH G V +++ SP+G   AS G+D  + LWDLA G     L      I +L FSP+   + +A+ + S+++WD+ S
Sbjct:  407 TARLWSF--DRTYPLRIYAGHLADVDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRS 541          
The following BLAST results are available for this feature:
BLAST of CX671426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
WDR5_XENTR1.549e-1226.55WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT1.549e-1226.55WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE1.549e-1226.55WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN1.549e-1226.55WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN1.549e-1226.55WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
WDR48_DROSI1.549e-1228.91WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROSE1.549e-1228.91WD repeat-containing protein 48 homolog OS=Drosoph... [more]
Y1491_SYNY32.022e-1227.50Uncharacterized WD repeat-containing protein sll14... [more]
WDR48_DROME2.022e-1228.91WD repeat-containing protein 48 homolog OS=Drosoph... [more]
TAF5L_MOUSE2.641e-1228.00TAF5-like RNA polymerase II p300/CBP-associated fa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A04-B7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671426 ID=CX671426; Name=CX671426; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATAAGCCAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCGCC
GAGCGTGTTCCACAACTTGATCGTAC
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