CX671426
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11 Identity = 55/198 (27.78%), Postives = 86/198 (43.43%), Query Frame = -3 Query: 240 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 824 T++LW+ +G + W + +FSP VS DR ++W + + AGH VN P+ + A+G D + LWD+ G R+++ G IH+L FSPN R+ AT+ + +WD+ +V +LK + C SL +S DG L SG D +R+W Sbjct: 566 TVRLWSLQTFTCLVGYKGHNYPVWDT--QFSPYGYY--FVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK-------------------GHTDTVC-SLRFSRDGEILASGSMDNTVRLW 738 HSP 2 Score: 68.1662 bits (165), Expect = 6.506e-11 Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = -3 Query: 384 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVD 764 H V+C RF PN+ + + S DRTV++W++ N GH G ++++ SP+G A+G DG +LLWD+ G + L + +L FS + L + + + ++++WD + EDL+ D Sbjct: 626 HLADVNCTRFHPNSNY--VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD--AIKAFEDLETD 750
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11 Identity = 51/202 (25.25%), Postives = 82/202 (40.59%), Query Frame = -3 Query: 234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQ-SIKIWDLESKSIVEDLK---------------------VDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 764 H V C +F PN T+ SA +DR + +WN+ +C ATL GH+G V + + DGS+ S D + +WD G+R+ L C+ R +C ++ ++K+WD+ K+ V+ + +D T L+ S +GS L S D +RVW + Sbjct: 66 HEGEVYCCKFHPNG--STLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDV 265
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11 Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = -3 Query: 477 TIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFS 824 TIKLW+ +C T+ H VSCVRF+P+ Q ++S+S D+T+KVW + TL GH +V + VS DGS AS D I W++ +G+ L + + V+ L FS Sbjct: 171 TIKLWDFQTYDCVKTLH---GHDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECLAFS 283
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11 Identity = 55/178 (30.90%), Postives = 81/178 (45.51%), Query Frame = -3 Query: 234 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 755 W + S TIV+ S D VKVW S+ KL TL GH V +V +S +G++ AS D I LWDL GK++ S+DAG V + FSP+ ++ + + I+ +ES L + + S+ +S DG L SG DG+I ++ I Sbjct: 20 WTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_PONAB (WD repeat-containing protein 48 OS=Pongo abelii GN=WDR48 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11 Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3 Query: 228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764 HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_MACFA (WD repeat-containing protein 48 OS=Macaca fascicularis GN=WDR48 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11 Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3 Query: 228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764 HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_HUMAN (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11 Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3 Query: 228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764 HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_CHICK (WD repeat-containing protein 48 OS=Gallus gallus GN=WDR48 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11 Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3 Query: 228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764 HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_BOVIN (WD repeat-containing protein 48 OS=Bos taurus GN=WDR48 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11 Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3 Query: 228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764 HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11 Identity = 50/202 (24.75%), Postives = 82/202 (40.59%), Query Frame = -3 Query: 234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQ-SIKIWDLESKSIVEDLK---------------------VDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 764 H V C +F PN T+ SA +DR + +WN+ +C ATL GH+G V + + DGS+ S D + +WD G+R+ L C+ R +C ++ ++K+WD+ K+ ++ + +D T L+ S +GS L S D +RVW + Sbjct: 65 HEGEVYCCKFHPNG--STLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDV 264 The following BLAST results are available for this feature:
BLAST of CX671426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671426 ID=CX671426; Name=CX671426; organism=Citrus sinensis; type=EST; length=826bpback to top |