CX671426

Overview
NameCX671426
Unique NameCX671426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671426_ssr335 microsatellite CX671426_ssr335:335..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:454..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 55/198 (27.78%), Postives = 86/198 (43.43%), Query Frame = -3
Query:  240 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 824
            T++LW+          +G  +  W +  +FSP       VS   DR  ++W   + +     AGH   VN     P+ +  A+G  D  + LWD+  G   R+++   G  IH+L FSPN R+    AT+  + +WD+    +V +LK                      +  C SL +S DG  L SG  D  +R+W
Sbjct:  566 TVRLWSLQTFTCLVGYKGHNYPVWDT--QFSPYGYY--FVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK-------------------GHTDTVC-SLRFSRDGEILASGSMDNTVRLW 738          

HSP 2 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = -3
Query:  384 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVD 764
            H   V+C RF PN+    + + S DRTV++W++ N        GH G ++++  SP+G   A+G  DG +LLWD+  G  +  L      + +L FS +   L + + + ++++WD  +    EDL+ D
Sbjct:  626 HLADVNCTRFHPNSNY--VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD--AIKAFEDLETD 750          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 51/202 (25.25%), Postives = 82/202 (40.59%), Query Frame = -3
Query:  234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQ-SIKIWDLESKSIVEDLK---------------------VDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 764
            H   V C +F PN    T+ SA +DR + +WN+  +C   ATL GH+G V  +  + DGS+  S   D  + +WD   G+R+  L         C+   R    +C  ++  ++K+WD+  K+ V+  +                     +D                        T L+ S +GS L S   D  +RVW +
Sbjct:   66 HEGEVYCCKFHPNG--STLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDV 265          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = -3
Query:  477 TIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFS 824
            TIKLW+    +C  T+     H   VSCVRF+P+  Q  ++S+S D+T+KVW  +      TL GH  +V  + VS DGS  AS   D  I  W++ +G+ L +  +   V+  L FS
Sbjct:  171 TIKLWDFQTYDCVKTLH---GHDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECLAFS 283          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 55/178 (30.90%), Postives = 81/178 (45.51%), Query Frame = -3
Query:  234 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 755
            W +    S      TIV+ S D  VKVW  S+ KL    TL GH   V +V +S +G++ AS   D  I LWDL  GK++ S+DAG V    + FSP+  ++   +    + I+ +ES      L                      +  +  S+ +S DG  L SG  DG+I ++ I
Sbjct:   20 WTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_PONAB (WD repeat-containing protein 48 OS=Pongo abelii GN=WDR48 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3
Query:  228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764
            HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_MACFA (WD repeat-containing protein 48 OS=Macaca fascicularis GN=WDR48 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3
Query:  228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764
            HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_HUMAN (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3
Query:  228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764
            HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_CHICK (WD repeat-containing protein 48 OS=Gallus gallus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3
Query:  228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764
            HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_BOVIN (WD repeat-containing protein 48 OS=Bos taurus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 54/190 (28.42%), Postives = 83/190 (43.68%), Query Frame = -3
Query:  228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764
            HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 50/202 (24.75%), Postives = 82/202 (40.59%), Query Frame = -3
Query:  234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQ-SIKIWDLESKSIVEDLK---------------------VDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 764
            H   V C +F PN    T+ SA +DR + +WN+  +C   ATL GH+G V  +  + DGS+  S   D  + +WD   G+R+  L         C+   R    +C  ++  ++K+WD+  K+ ++  +                     +D                        T L+ S +GS L S   D  +RVW +
Sbjct:   65 HEGEVYCCKFHPNG--STLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDV 264          
The following BLAST results are available for this feature:
BLAST of CX671426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TAF5_HUMAN2.920e-1127.78Transcription initiation factor TFIID subunit 5 OS... [more]
SNR40_MOUSE2.920e-1125.25U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
LIS1_DICDI2.920e-1137.29Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
WDR61_DANRE3.814e-1130.90WD repeat-containing protein 61 OS=Danio rerio GN=... [more]
WDR48_PONAB3.814e-1128.42WD repeat-containing protein 48 OS=Pongo abelii GN... [more]
WDR48_MACFA3.814e-1128.42WD repeat-containing protein 48 OS=Macaca fascicul... [more]
WDR48_HUMAN3.814e-1128.42WD repeat-containing protein 48 OS=Homo sapiens GN... [more]
WDR48_CHICK3.814e-1128.42WD repeat-containing protein 48 OS=Gallus gallus G... [more]
WDR48_BOVIN3.814e-1128.42WD repeat-containing protein 48 OS=Bos taurus GN=W... [more]
SNR40_HUMAN3.814e-1124.75U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A04-B7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671426 ID=CX671426; Name=CX671426; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATAAGCCAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCGCC
GAGCGTGTTCCACAACTTGATCGTAC
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