CX671415

Overview
NameCX671415
Unique NameCX671415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5053 contig Csv1_Contig5053:360..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671415 vs. ExPASy Swiss-Prot
Match: TGA1A_TOBAC (TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 76/133 (57.14%), Postives = 88/133 (66.17%), Query Frame = -2 
Query:  337 ERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANXXXXXXXXXGNVANY-MGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYF 732
            ER FMWIGGFR SELLK+L   LE LTEQQL  + NL QS QQAEDALSQGM  L Q LAE +A              NY + QM  A+ KL  L  F+ QAD+LRQ+TLQQM RIL T Q+A+ LLA+ +YF
Sbjct:  216 ERFFMWIGGFRPSELLKVLTPHLELLTEQQLREVCNLTQSCQQAEDALSQGMVKLHQILAEAVA-------AGRLGEGNYTLPQMGPAIEKLEDLVRFVNQADHLRQETLQQMSRILNTCQAAQGLLALGEYF 341
The following BLAST results are available for this feature:
BLAST of CX671415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TGA1A_TOBAC3.682e-2857.14TGACG-sequence-specific DNA-binding protein TGA-1A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10H09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H09-O18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671415 ID=CX671415; Name=CX671415; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTCTCAATTCTAACAAACATCAAGCATTACCAGATTATTAGCACT
ATTTTACAACACAATAAGCATACAAAACCTAAATGAACATATCTAAAGCT
ACAGGTATAGATGGAACCTATAAATACAGCAAATGTGAGCCATTCCATTG
CTCCTTAACGATATAGAACAGAGGAGCTCTAACCAGTATTAATTTGTATT
GTCACTGCAGAAACTTGTGGTTATAATTTAATCATCTACCAAGTCATATA
CCCTTCAGAATAACTTTTTGAAGAGGAACTGTCTCTCACTCCCGTGGCCG
GGCCAGCCAGAGAGAACTGAGGGCTCTAAGCCTAGAGAAGTAATCATTTA
TTGCGAGCAACGCACGAGCTGATTGTCGGGTGGTCAATATACGATGCATC
TGTTGTAGAGTTTGCTGACGTAGATTATCAGCCTGCCGAAGAAACCCTTC
AAGAGTTCCTAGCTTTCCCATTGCCATGGCCATTTGACCCATGTAGTTTG
CAACATTCCCAGATGTTCCCGATGGGCTGGGTGACCCATTGGCCAATGTC
TCAGCCAGAGATTGCTGCAATGCATCCATCCCTTGTGACAGAGCATCTTC
TGCCTGTTGGGATGACTGCTGCAAATTATAGATGCCTACCAACTGCTGCT
CGGTTAAAGGCTCCAACTGATTCACAAGAAGCTTAAGGAGCTCAGATGAC
CGAAACCCACCAATCCACATAAAACACCTTTCT
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