CX671414

Overview
NameCX671414
Unique NameCX671414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5053 contig Csv1_Contig5053:1..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671414 vs. ExPASy Swiss-Prot
Match: TGA1A_TOBAC (TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.788e-52
Identity = 113/205 (55.12%), Postives = 139/205 (67.80%), Query Frame = 1 
Query:  145 AAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANXXXXXXXXXXNVANY-MGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYF 756
            A FD+EY  W+EE  R   +LR A++S  G+ ELR IVD   +H+ ++FR+K  A+KADV +I+SGMWKT AER FMWIGGFR SELLK+L   LE LTEQQL  + NL QS QQAEDALSQGM  L Q LAE +A              NY + QM  A+ KL  L  F+ QAD+LRQ+TLQQM RIL T Q+A+ LLA+ +YF
Sbjct:  144 AVFDMEYGHWVEEQTRQTNDLRIALHSQIGEAELRIIVDGYLNHYFDLFRMKATAAKADVLYIMSGMWKTSAERFFMWIGGFRPSELLKVLTPHLELLTEQQLREVCNLTQSCQQAEDALSQGMVKLHQILAEAVA-------AGRLGEGNYTLPQMGPAIEKLEDLVRFVNQADHLRQETLQQMSRILNTCQAAQGLLALGEYF 341
The following BLAST results are available for this feature:
BLAST of CX671414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TGA1A_TOBAC7.788e-5255.12TGACG-sequence-specific DNA-binding protein TGA-1A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10H09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H09-O18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671414 ID=CX671414; Name=CX671414; organism=Citrus sinensis; type=EST; length=835bp
GACTTTTTAATGGTCTGCCGATATGTTCTGTGAGATCTGTGAGATCCAAG
GAAAGCATTTAAAGTCTTGCTGCAACATCAAAGTTGCTTGTTCATAATTA
TATTGGATCAAAATCTCTGCTGCATGAGCTTAATATACTGTGCAGCAGCA
TTTGATGTAGAATATTCTCGCTGGCTTGAAGAGCACAACAGGCATATAGT
TGAGCTAAGGGCTGCAGTCAATTCACATGCAGGGGACACTGAACTCCGTA
CTATCGTTGACAACGTTACATCACACTTTGATGAAATTTTCAGGCTTAAA
GGCATTGCTTCAAAGGCTGATGTCTTCCACATCTTGTCAGGAATGTGGAA
GACACCAGCAGAAAGGTGTTTTATGTGGATTGGTGGGTTTCGGTCATCTG
AGCTCCTTAAGCTTCTTGTGAATCAGTTGGAGCCTTTAACCGAGCAGCAG
TTGGTAGGCATCTATAATTTGCAGCAGTCATCCCAACAGGCAGAAGATGC
TCTGTCACAAGGGATGGATGCATTGCAGCAATCTCTGGCTGAGACATTGG
CCAATGGGTCACCCAGCCCATCGGGAACATCTGGGAATGTTGCAAACTAC
ATGGGTCAAATGGCCATGGCAATGGGAAAGCTAGGAACTCTTGAAGGGTT
TCTTCGGCAGGCTGATAATCTACGTCAGCAAACTCTACAACAGATGCATC
GTATATTGACCACCCGACAATCAGCTCGTGCGTTGCTCGCAATAAATGAT
TACTTCTCTAGGCTTAGAGCCCTCAGTTCTCTCTGGCTGGCCCGGCCACG
GGAGTGAGAGACAGTTCCTCTTCAAAAAGTTATTC
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