CX671410

Overview
NameCX671410
Unique NameCX671410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671410 vs. ExPASy Swiss-Prot
Match: URM1_LACBS (Ubiquitin-related modifier 1 OS=Laccaria bicolor (strain S238N-H82) GN=URM1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = -1
Query:  183 LLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 365
            LL  +  +L+KER E+FM+  +VRPG+LVL+ND DWEL G+ +  L++ D +V ISTLHGG
Sbjct:   62 LLHHLRDHLLKEREELFMENGTVRPGILVLINDTDWELEGEGEYLLKDGDEIVLISTLHGG 122          
BLAST of CX671410 vs. ExPASy Swiss-Prot
Match: URM1_COCIM (Ubiquitin-related modifier 1 OS=Coccidioides immitis GN=URM1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  183 LLSWVGTNLIK-ERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 365
            L+ ++  NL+K ER E+F+  DSVRPG+LVL+ND DWEL G+    +++ D ++F+STLHGG
Sbjct:   54 LIKYLCQNLMKDERKELFVLDDSVRPGILVLINDADWELEGEEQYRIQQNDNILFVSTLHGG 115          
BLAST of CX671410 vs. ExPASy Swiss-Prot
Match: URM1_ASPOR (Ubiquitin-related modifier 1 OS=Aspergillus oryzae GN=urm1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  183 LLSWVGTNLIK-ERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 365
            LL ++  N++K ER E+FM  D+VRPG+LVL+ND DWEL G+    L+  D +VF+STLHGG
Sbjct:   59 LLEYLVKNVMKDERKELFMLEDNVRPGILVLINDADWELEGEEKYELQPADNIVFVSTLHGG 120          
BLAST of CX671410 vs. ExPASy Swiss-Prot
Match: URM1_ASHGO (Ubiquitin-related modifier 1 OS=Ashbya gossypii GN=URM1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 33/81 (40.74%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  183 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 419
            H V V    GS  + + DL+ ++ +N+I+++ ++  F++ +++RPG+L L+ND DWEL G+ +  LE+ D+V F STLHGG
Sbjct:   22 HQVSVEGANGS--VTVGDLIDYIVSNMIQKQKDVSVFLEDNTIRPGILTLINDTDWELEGEKEYVLEDGDIVSFTSTLHGG 100          
BLAST of CX671410 vs. ExPASy Swiss-Prot
Match: URM1_CANGA (Ubiquitin-related modifier 1 OS=Candida glabrata GN=URM1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  183 KVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 425
            +V+++DV  P   E +   DL+ ++  NLI  K+  E+F++ DS+RPG++ L+ND DWEL  + +  +E+ DV+ F STLHGG
Sbjct:   20 RVYDLDV--PSQVENV--GDLIDYIIENLITNKKDVEVFIENDSIRPGIITLINDTDWELENEKEYVIEDGDVISFTSTLHGG 98          
BLAST of CX671410 vs. ExPASy Swiss-Prot
Match: URM1_PICST (Ubiquitin-related modifier 1 OS=Pichia stipitis GN=URM1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = -1
Query:  183 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 434
            + V+ H++ V   +G  +  +KDL+  +  ++I +  ++  F++ D+VRPG+LVL+ND DWEL G  +  LE  DV  F STLHGG
Sbjct:   18 NKVREHSLKVPLEEG--EATVKDLIELITKSIIADPKDIPVFIEDDTVRPGILVLINDTDWELEGMEEYVLESGDVFTFTSTLHGG 101          
BLAST of CX671410 vs. ExPASy Swiss-Prot
Match: URM1_LODEL (Ubiquitin-related modifier 1 OS=Lodderomyces elongisporus GN=URM1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = -1
Query:  183 SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 431
            SV+ H V +   +G  +  MK+ ++++  NL+ +  ++  F++  +VR G+LVL+ND DWEL G+ D  +E  DV++F STLHGG
Sbjct:   19 SVRDHKVTLPYEEG--EATMKEAVNYIAENLVTDPKDIPVFIEDGTVRAGILVLINDTDWELEGKEDYLVENGDVLIFTSTLHGG 101          
BLAST of CX671410 vs. ExPASy Swiss-Prot
Match: URM1_DEBHA (Ubiquitin-related modifier 1 OS=Debaryomyces hansenii GN=URM1 PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -1
Query:  183 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 434
            + V+ H  +V   +G   +I  DL+ ++   +I +  ++  F++  +VRPG+LVL+ND DWEL G  D  +E  DV+ F STLHGG
Sbjct:   18 NGVREHKCEVPLEEGEATMI--DLIKYITATIISDPKDVPVFIEEGTVRPGILVLINDTDWELEGMEDYVVESGDVLTFTSTLHGG 101          
The following BLAST results are available for this feature:
BLAST of CX671410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
URM1_LACBS2.363e-1254.10Ubiquitin-related modifier 1 OS=Laccaria bicolor (... [more]
URM1_COCIM4.031e-1251.61Ubiquitin-related modifier 1 OS=Coccidioides immit... [more]
URM1_ASPOR5.264e-1254.84Ubiquitin-related modifier 1 OS=Aspergillus oryzae... [more]
URM1_ASHGO6.875e-1240.74Ubiquitin-related modifier 1 OS=Ashbya gossypii GN... [more]
URM1_CANGA3.412e-1142.17Ubiquitin-related modifier 1 OS=Candida glabrata G... [more]
URM1_PICST5.820e-1140.70Ubiquitin-related modifier 1 OS=Pichia stipitis GN... [more]
URM1_LODEL7.602e-1140.00Ubiquitin-related modifier 1 OS=Lodderomyces elong... [more]
URM1_DEBHA7.602e-1139.53Ubiquitin-related modifier 1 OS=Debaryomyces hanse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10H07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H07-O14-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671410 ID=CX671410; Name=CX671410; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTAGTCATTAACATGCATGACACCATAATGAGGCT
CAACAAAACATTCAACATCTTCATCTCATTCCACATGCTTCAACAAGCAT
ACTCAATACCCAGACAAGGGTACAACCAATTTTCAATAACAAGTGCTTAT
CATCTAAGAAATTACAATAATTTAGCTTATCACCCGCCGTGTAAAGTTGA
AATAAAAACAACCACATCCTTTTCCTCCAGTGTGGTATCCAGCTGCCCAC
TGAGCTCCCAGTCACAATCATTCACAAGTACTAGAACACCAGGTCTCACA
GAATCTCCTTTCATGAACATTTCAGGCCTCTCCTTGATCAAATTGGTGCC
GACCCAAGAAAGCAAATCTTTCATAATCAACTTCTCTGATCCTTTTGGTG
GAACAACATCGACATTATGGACCTTTACCGAATCACAAAGAAGCTCTAAC
CCTCCACCGAATTCTAGAGTCAGTTGCATGGTTCAAGATTTGCAGAAATT
TCAGAAATTTGCAAAACCCTAAAAGAACAGAGATGTGAGAACGTTGTGTT
AACTTGACGAAAACCGCGCTCGAAACACCTCGTCGTCGTAGCCGCGCCCA
TAACAAGACCACGAGTACTCTCCACATCTCCTGTTTCCTTTCCGCTTAAA
ACCGCTAAACCACCT
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