EY664361

Overview
NameEY664361
Unique NameEY664361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB2_HUMAN (High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPG 464
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y  + ++E  K G
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG 174
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB2_BOVIN (High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPG 464
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y  + ++E  K G
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG 174
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB2_PIG (High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 39/85 (45.88%), Postives = 47/85 (55.29%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPG 464
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y  + + E  K G
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKGEAGKKG 174
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB1_RAT (High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 440
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB1_PAPAN (High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 440
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB1_MOUSE (High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 440
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB1_MACFA (High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 440
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB1_HUMAN (High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 440
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB1_HORSE (High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 440
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of EY664361 vs. ExPASy Swiss-Prot
Match: HMGB1_CRIGR (High mobility group protein B1 (Fragment) OS=Cricetulus griseus GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  213 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 440
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   56 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 130
The following BLAST results are available for this feature:
BLAST of EY664361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
HMGB2_HUMAN1.529e-1245.88High mobility group protein B2 OS=Homo sapiens GN=... [more]
HMGB2_BOVIN1.529e-1245.88High mobility group protein B2 OS=Bos taurus GN=HM... [more]
HMGB2_PIG1.997e-1245.88High mobility group protein B2 OS=Sus scrofa GN=HM... [more]
HMGB1_RAT1.997e-1247.37High mobility group protein B1 OS=Rattus norvegicu... [more]
HMGB1_PAPAN1.997e-1247.37High mobility group protein B1 OS=Papio anubis GN=... [more]
HMGB1_MOUSE1.997e-1247.37High mobility group protein B1 OS=Mus musculus GN=... [more]
HMGB1_MACFA1.997e-1247.37High mobility group protein B1 OS=Macaca fascicula... [more]
HMGB1_HUMAN1.997e-1247.37High mobility group protein B1 OS=Homo sapiens GN=... [more]
HMGB1_HORSE1.997e-1247.37High mobility group protein B1 OS=Equus caballus G... [more]
HMGB1_CRIGR1.997e-1247.37High mobility group protein B1 (Fragment) OS=Crice... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-065-G05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664361 ID=EY664361; Name=EY664361; organism=Citrus sinensis; type=EST; length=819bp
CCACGCGTCCGTCCGCTATTCACATCTGCGTCTCTCTCTTTTTCTCTTTC
CTCTTTTTCTCTCATTTGAAGCCCTAACCCTAGCTCTATCTTTCTTCAGA
AACAGGATTTGAAATGAAAGGAGGTAAATCAAAGTCAGACACCAGAAACG
CCAAGCTCTCTGTGAACAAGAAGCCTGCCAAAGCTGGACGAAAATCGGGA
AAGGCAGCTAAGGACCCGAACAAGCCAAAGAGGCCAGCCAGCGCCTTCTT
TGTTTTCATGGAAGAATTCCGTGAACAATACAAGAAGGATCATCCTAAGA
ACAAATCAGTTGCTGCTGTTGGTAAAGCTGGTGGTGAGAAATGGAAGTCA
ATGTCTGAAGCTGATAAAGCACCGTATGTTGCTAAGGCAGAGAAGCGCAA
GGTTGAGTATGAGAAGGATATGAAAAACTACAATAGGAGACAGGCGGAGG
GAACTAAGCCGGGAGAAGAAGAGGAGTCTGAGAAGTCTATGTCAGAGGTG
AATGATGAGGATGATGATGAAAAAGGCAGTGGCGAGGAGGATGATGATGA
ATANAATTTGAAGGAAGAAATAGCATAGTCATGTTAGGCTGTGACAATGG
TTCAAACACATATGTTAATGCTTTGGGCTTCCATGGTAATTTTTTTGAAT
GCTTCATCATCTTATCATCATGTAAGAAGATCATGGTGGCTCCTCCTCGA
CTTTTCTTTATGCTGCCTTCAAAGAATTATANCTGGAAGGGGGAGATTCA
CTGCTCCTATAGGACGGGGTCTAAAGCTTATGAATTACCTAAGGCGTTCA
TTGGTGGAAAAAAAAAAAA
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