EY664354

Overview
NameEY664354
Unique NameEY664354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY664354 vs. ExPASy Swiss-Prot
Match: RS11_ACTSZ (30S ribosomal protein S11 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 3 
Query:  126 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 455
            V GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   17 VDGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEMVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
The following BLAST results are available for this feature:
BLAST of EY664354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS11_ACTSZ9.526e-1136.3630S ribosomal protein S11 OS=Actinobacillus succin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-065-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664354 ID=EY664354; Name=EY664354; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCGAGGCTTTTGTGATAAACTCTCCGTGTCATCAGTAGCC
ATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAATGTTACTCTTGG
ACCTGCCGTTAGAGATGGTGAGCATGTATTTGGCGTTGCCCACATTTTTG
CATCGTTTAATGACACTTTCATTCATGTGACTGACTTGTCTGGAAGAGAA
ACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGCTGACAGGGATGA
ATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATGTTTCTCAACGAT
GCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTCCGGGCTACTGGG
GGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTCAGCACTTAGAGC
TCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGGATGTGACTCCAA
TTCCCACCGACAGTACCCGCAGAAAGGGTGGTAGAAGGGGTAGAACGTTG
TAATTCTTTTCCTCATACCCATCCATAACGTTCAAGATGATGNCCGTGGT
TGCCGAGAGTTTCACTCTCTTCTGTTAGATGCAAGACTTATTTCCCAATT
TTGTTNGTTGGAATGTCTGTANTCTCGGATTCCTTTTGTGTAGCCTTTCC
GATCAATTAGTTTATACAGTGGCAAGACTAATCATTTCTCCTGATTTTCT
GAAATTTATTGGTTATCTACATTACAAGTATTGTGTTAAGTGGTAAGTAT
GATGGTAGTGCTATGATTAAAAAAAAANNAAAGGGGGGGGGCGCGCCCCC
CCCNNTCCNNTTCTCCCCCCCCGNCGGCGGGCGGNCGGGCCCTTTTCCCT
CCTCCTGTGGCCCTTTCCGGCTTGTTTTTTCGGTCTCC
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