CX671380

Overview
NameCX671380
Unique NameCX671380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:968..1829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.764e-30
Identity = 67/178 (37.64%), Postives = 106/178 (59.55%), Query Frame = -2
Query:  334 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 858
            SGHK+GL   GVGWVVWR K+D+  +LVF +NYLG + PTF+LNFS+   QI+ QYY F+R G  GY  + + C+ +   + + ++K G F+I+    G +P   + LK  +     +F++S+ +R  GW + +YT+P N  ++ V RV++R  FS  +   LI      ++  +  P
Sbjct:  271 SGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLP-NLPDIVVQRVLIRHGFSHDMAMLLIEDFNRSIEYFDKHP 447          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.970e-25
Identity = 85/268 (31.72%), Postives = 122/268 (45.52%), Query Frame = -2
Query:  217 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA----LREGLEKTGRFEILS---------------KDV---------GVPLVAFSLKDSSAHTVFEISEG-----LRKFGWIVPAYTMPA---NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI---------------ESLPSRVSTKTAHVIPMVNETQGDKPLKKSV---RETQEEVTRHWK 858
            SGHK+GL   G+GWV+WR +  L DEL F + YLG  + TF LNFS+   Q++ QY+ F+ LG  GY+   +N +  ARA    L    +  G FEI+S               KD          GVPLVAF L         E+ +      LR  GWI+P Y +P     ++   VLRVV R +    L + LI  IE +L ++               E  P R S+    ++  +   Q D P    +    + +E  TR+++
Sbjct:  315 SGHKFGLTTPGLGWVLWRDESLLADELRFKLKYLGGVEETFGLNFSRPGFQVVHQYFNFVSLGHSGYRTQFQNSLFVARAFSFELLNSSKLPGCFEIVSSIHESIENDSAPKSVKDYWEHPQAYKPGVPLVAFKLSKKFHEEYPEVPQAILSSLLRGRGWIIPNYPLPKATDGSDEKEVLRVVFRSEMKLDLAQLLIVDIESILTKLIHSYEKVCHHIELASEQTPERKSSFIYEMLLALASPQDDIPTPDEIEKKNKLKETTTRNYR 582          
The following BLAST results are available for this feature:
BLAST of CX671380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GADA_DICDI1.764e-3037.64Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCE_YEAST4.970e-2531.72Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10G03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10G03-M6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671380 ID=CX671380; Name=CX671380; organism=Citrus sinensis; type=EST; length=862bp
AAGCAATAAGCATATACCTCTATTTGCCACTTCACAAGCGTGCAAGAAAA
CATAAATAGGCTTCAACAATCACATAAAGTAAACACACCTTCAAGTACGA
ATATACAGAAAACAGGAAGAAGCAATAGCTTTAATATTCAAACAAGCATA
CAAATCTTGTCTCATCTTATGTTTGGAACCTCAGCATGCTCCAGCTCTCC
GGCCTTTCACGAACCTCTTCCAGTGCCTGGTGACTTCCTCCTGAGTCTCC
CTCACACTCTTCTTAAGTGGCTTATCACCCTGAGTTTCGTTGACCATGGG
TATGACATGGGCAGTTTTTGTGGATACACGACTTGGAAGCGATTCAATTT
CCTTCAAAACTTCCTCGATGTGTGAGATGAGTCTTTCCACCAAGCTACGG
CTGAAATCCTCCCTGACAACCACCCGAAGAACCGCCACATTTTCAGCATT
AGCAGGCATTGTATAGGCCGGAACTATCCACCCAAACTTTCTCAAACCCT
CGGATATCTCAAACACGGTGTGTGCGCTGCTGTCCTTCAAAGAAAAGGCT
ACTAAGGGTACGCCAACATCCTTGGAGAGAATTTCAAAGCGCCCTGTTTT
CTCTAATCCTTCTCTTAGCGCTCTAGCATTCCCCATGCAATTTTCCATAA
TGTTCTTGTAACCCTCAAAGCCAAGCCGTATAAACTGATAATATTGAGCA
ATTATTTGACTGGAGCCTTTTGAGAAGTTGAGGGTGAAAGTCGGTTGATC
AGATCCAAGGTAGTTGATGTGAAAGACAAGTTCATCCGGCAAGTCATCTT
TGGTCCTCCAGACAACCCAGCCAACACCTGCATATACAAGGCCGTACTTG
TGACCACTGACA
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