CX671379
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 6.562e-54 Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = -1 Query: 186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641 MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH VSKK+ Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3) HSP 1 Score: 210.69 bits (535), Expect = 6.562e-54 Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = -1 Query: 186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641 MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH VSKK+ Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3) HSP 1 Score: 210.69 bits (535), Expect = 6.562e-54 Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = -1 Query: 186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641 MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH VSKK+ Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.909e-53 Identity = 96/152 (63.16%), Postives = 125/152 (82.24%), Query Frame = -1 Query: 186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641 MSLV + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE + E+++++ +++NPRQ+KIPDWFLNRQKD DG+YSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH VSKK+ Sbjct: 1 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.334e-51 Identity = 95/152 (62.50%), Postives = 121/152 (79.61%), Query Frame = -1 Query: 186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641 MSLV E FQHILR++NTN+DGK+K+ A+T+IKG+GRR +NIV KKADVD+ KRAGE + E+D+++ +++NP Q+K+P+WFLNRQKD DG+Y Q+ S+ LD KLRDDLERLKKIR+HRGLRHYWGLRVRGQH VSKK+ Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 1.976e-50 Identity = 96/152 (63.16%), Postives = 119/152 (78.29%), Query Frame = -1 Query: 186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641 MSLV ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+ EL++++ ++ NP QFKIP WFLNRQKD DG+ Q+++N +D KLR+DLERLKKI+ HRGLRH LRVRGQH VSKK+ Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQHTKTTGRRGKTVGVSKKK 152
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.565e-47 Identity = 85/133 (63.91%), Postives = 112/133 (84.21%), Query Frame = -1 Query: 240 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 638 SLV +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS E+++L ++ +PRQ+ IP WFLNRQKD KDG+YS ++N +D+K R+DLERLKKIR HRG+RH++GLRVRGQ Sbjct: 4 SLVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRHHFGLRVRGQ 136
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4) HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47 Identity = 88/137 (64.23%), Postives = 112/137 (81.75%), Query Frame = -1 Query: 237 MSLVANED--FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 641 MSLV E FQHILR+LNTNVDG KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL+ EL++++ ++ NP +KIP WFLNRQ D DG+ ++N ++ KLRDDLERLKKIR HRG+RH+WGLRVRGQH Sbjct: 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.586e-42 Identity = 75/134 (55.97%), Postives = 110/134 (82.09%), Query Frame = -1 Query: 237 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 638 ++ + +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG ++ AE+++++ ++ +KIP WFLNRQKD KDG+ SQ+++NA++ +LR+D+E LKK+R HRGLRHYWGLRVRGQ+ Sbjct: 3 TVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQN 136
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27 Identity = 56/131 (42.75%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 240 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 632 +A ++F+H++R+ +VDG I ALT I+GIG+ A +CK D+D + + G + + Q+ V+ NP++F IP+WFLNR+ DY+ G ++ + L+M LRDDL R+K IR+++G RH GL VRGQ Sbjct: 1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGKRHEVGLPVRGQ 131 The following BLAST results are available for this feature:
BLAST of CX671379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671379 ID=CX671379; Name=CX671379; organism=Citrus sinensis; type=EST; length=728bpback to top |