CX671379

Overview
NameCX671379
Unique NameCX671379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.562e-54
Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = -1
Query:  186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 6.562e-54
Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = -1
Query:  186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 6.562e-54
Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = -1
Query:  186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.909e-53
Identity = 96/152 (63.16%), Postives = 125/152 (82.24%), Query Frame = -1
Query:  186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641
            MSLV  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E+++++ +++NPRQ+KIPDWFLNRQKD  DG+YSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.334e-51
Identity = 95/152 (62.50%), Postives = 121/152 (79.61%), Query Frame = -1
Query:  186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641
            MSLV  E FQHILR++NTN+DGK+K+  A+T+IKG+GRR +NIV KKADVD+ KRAGE +  E+D+++ +++NP Q+K+P+WFLNRQKD  DG+Y Q+ S+ LD KLRDDLERLKKIR+HRGLRHYWGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.976e-50
Identity = 96/152 (63.16%), Postives = 119/152 (78.29%), Query Frame = -1
Query:  186 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 641
            MSLV  ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+  EL++++ ++ NP QFKIP WFLNRQKD  DG+  Q+++N +D KLR+DLERLKKI+ HRGLRH   LRVRGQH            VSKK+
Sbjct:    1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQHTKTTGRRGKTVGVSKKK 152          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.565e-47
Identity = 85/133 (63.91%), Postives = 112/133 (84.21%), Query Frame = -1
Query:  240 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 638
            SLV   +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS  E+++L  ++ +PRQ+ IP WFLNRQKD KDG+YS  ++N +D+K R+DLERLKKIR HRG+RH++GLRVRGQ
Sbjct:    4 SLVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRHHFGLRVRGQ 136          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47
Identity = 88/137 (64.23%), Postives = 112/137 (81.75%), Query Frame = -1
Query:  237 MSLVANED--FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 641
            MSLV  E   FQHILR+LNTNVDG  KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL+  EL++++ ++ NP  +KIP WFLNRQ D  DG+    ++N ++ KLRDDLERLKKIR HRG+RH+WGLRVRGQH
Sbjct:    1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.586e-42
Identity = 75/134 (55.97%), Postives = 110/134 (82.09%), Query Frame = -1
Query:  237 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 638
            ++ +  +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG ++ AE+++++ ++     +KIP WFLNRQKD KDG+ SQ+++NA++ +LR+D+E LKK+R HRGLRHYWGLRVRGQ+
Sbjct:    3 TVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQN 136          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 56/131 (42.75%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  240 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 632
            +A ++F+H++R+   +VDG   I  ALT I+GIG+  A  +CK  D+D + + G +    + Q+  V+ NP++F IP+WFLNR+ DY+ G    ++ + L+M LRDDL R+K IR+++G RH  GL VRGQ
Sbjct:    1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGKRHEVGLPVRGQ 131          
The following BLAST results are available for this feature:
BLAST of CX671379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_CAPHI6.562e-5465.1340S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]
RS18_CANFA6.562e-5465.1340S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN6.562e-5465.1340S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_SPOFR1.909e-5363.1640S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_DROME2.334e-5162.5040S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_SCHPO1.976e-5063.1640S ribosomal protein S18 OS=Schizosaccharomyces p... [more]
RS18_DICDI1.565e-4763.9140S ribosomal protein S18 OS=Dictyostelium discoid... [more]
RS18_YEAST7.769e-4764.2340S ribosomal protein S18 OS=Saccharomyces cerevis... [more]
RS18_ENTHI2.586e-4255.9740S ribosomal protein S18 OS=Entamoeba histolytica... [more]
RS13_METST1.055e-2742.7530S ribosomal protein S13P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10G02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10G02-M4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671379 ID=CX671379; Name=CX671379; organism=Citrus sinensis; type=EST; length=728bp
TGACTTTTTAATCACAATATCAAATGGAATTCCTTTCAATTCAGTCAAAA
AGACAACCTAAGAAAATAAACTGAAGAAAATTATCAAAAACAATTCTTCT
ACAAGACAGACATACTGAACGATGCAAAACTAACATGTAAACAAAACTTG
CAGCTTGATGAACCAATAGGAGATGACAAAACTCAACGCTTCTTGGAGAC
ACCAACGGTCTTTCCCCTGCGTCCAGTAGTCTTGGTGTGCTGTCCACGAA
CTCTAAGACCCCAGTAGTGTCGTAGACCACGGTGGTTTCTGATCTTCTTC
AAGCGCTCAAGATCATCCCTAAGCTTCATGTCCAATGCATTAGACACGAC
CTGGGAGTACCTCCCATCCTTGTAATCCTTTTGCCTGTTAAGAAACCAGT
CTGGGATCTTAAACTGGCGTGGATTTGCCACAACCACCATCAGTTGGTCA
AGCTCAGCGGCAGAGAGCTCACCAGCTCTTTTGTTCATGTCGACATCAGC
TTTCTTGCAGACAATATTGGCCAAACGGCGACCGATACCCTTAATGGATG
TGAGAGCAAACATGATCTTTTGTTTCCCATCAACATTCGTGTTCAGAACA
CGAAGAATGTGTTGAAAATCCTCGTTGGCTACCAGAGACATGGCTGGAGA
TGTTCGTTTCTCTTTTTTCCTTTATGGTTGACTTTTGTGCCTTCGCCTTC
TCCGGAGGTGAGTGTAAATGGAGGTATG
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