CX671379

Overview
NameCX671379
Unique NameCX671379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 52/128 (40.62%), Postives = 86/128 (67.19%), Query Frame = -1
Query:  240 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 623
            E+F+H++R+   ++DG + +  ALTSIKG+G+ L+  +   A  D+N+R G LS  E+++L   + NP ++ IP W +NR+ DY+ G    ++ + L+M LR+DL R++K R+++G RH  GL VRGQ
Sbjct:    3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHELGLPVRGQ 130          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 53/128 (41.41%), Postives = 87/128 (67.97%), Query Frame = -1
Query:  240 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 623
            +DF+H++R+   +VDG + I  ALT IKG+G  L+  +C+  D+D   + G ++  ++ ++  ++ NP++F IP+W LNR++DY+ G    ++ + LDM LRDDL R+KK R+++G RH  GL VRGQ
Sbjct:    3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTRSYKGRRHEAGLPVRGQ 130          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 56/145 (38.62%), Postives = 92/145 (63.45%), Query Frame = -1
Query:  186 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 620
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++ ++  ++ +P    IP W +NR KDY+ G+   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ             VSKK+
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSKKK 147          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 54/127 (42.52%), Postives = 88/127 (69.29%), Query Frame = -1
Query:  240 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 620
            +F+HI+RV   ++DG +++ +ALT+IKGIG   A +VC+ A +D   +AG L+  ++ ++  ++A+P    IP W +NR KDY+ GR   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:    3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24
Identity = 53/127 (41.73%), Postives = 87/127 (68.50%), Query Frame = -1
Query:  240 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 620
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++ ++  ++ +P    IP W +NR KDY+ GR   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 54/133 (40.60%), Postives = 89/133 (66.92%), Query Frame = -1
Query:  240 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA--NPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 632
            +A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A  +C++  +D  K+ GELS  E++++   +   +  +  IP W  NRQKDY+ G    +V   L+M ++ D++RLKKIR +RG+RH  GL VRGQ
Sbjct:    1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIRAYRGIRHELGLPVRGQ 133          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 53/132 (40.15%), Postives = 87/132 (65.91%), Query Frame = -1
Query:  240 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 635
            +++ + +++I+R+L T++ G  K+ + L  +KGIG  LA  +C+   +D NKR G L+ AE++++   +ANP    IP W LNR+KDY+ G+   +V   L   ++ D+ER K+IR+ RG+RH  GL+VRGQ
Sbjct:    1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRGIRHALGLKVRGQ 132          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 50/129 (38.76%), Postives = 86/129 (66.67%), Query Frame = -1
Query:  240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626
            NE+FQ+I+R+ N +++G++ +  AL  +KGIG RL+  + KK D+D ++R GEL   ++++L   +       IP W  N ++D   G+   +VSN LD+++ DD+  +KK+R+++G+RH  GL+VRGQ
Sbjct:    8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRHERGLKVRGQ 136          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 52/129 (40.31%), Postives = 84/129 (65.12%), Query Frame = -1
Query:  240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626
            N +F++++RV  T++DG +K++ AL  I G+G  +A  + + A +D NK AG L+  E+ ++  V+A+P +F IP W  NR+KDY  G    V+ + L +  ++D+ RLK+IR +RG+RH  GL  RGQ
Sbjct:    3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQ 131          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 53/127 (41.73%), Postives = 81/127 (63.78%), Query Frame = -1
Query:  240 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 620
            + Q+I+R+ NTN+DG ++I FALT I+GIG R+A  +CK+  +D+ KRAGE+   E+ ++   + +P    IP+ ++N Q+D  DG  S ++   LD  LR  +ER KK +  R  R   GL+VRGQ
Sbjct:    9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQ 135          
The following BLAST results are available for this feature:
BLAST of CX671379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_METTH4.432e-2640.6330S ribosomal protein S13P OS=Methanobacterium the... [more]
RS13_METS35.788e-2641.4130S ribosomal protein S13P OS=Methanobrevibacter s... [more]
RS13_PYRHO1.092e-2438.6230S ribosomal protein S13P OS=Pyrococcus horikoshi... [more]
RS13_PYRFU1.092e-2442.5230S ribosomal protein S13P OS=Pyrococcus furiosus ... [more]
RS13_PYRAB1.426e-2441.7330S ribosomal protein S13P OS=Pyrococcus abyssi GN... [more]
RS13_METKA2.432e-2440.6030S ribosomal protein S13P OS=Methanopyrus kandler... [more]
RS13_HYPBU4.148e-2440.1530S ribosomal protein S13P OS=Hyperthermus butylic... [more]
RS13_PICTO9.241e-2438.7630S ribosomal protein S13P OS=Picrophilus torridus... [more]
RS13_METJA1.207e-2340.3130S ribosomal protein S13P OS=Methanocaldococcus j... [more]
RS18_ENCCU5.990e-2341.7340S ribosomal protein S18 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10G02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10G02-M4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671379 ID=CX671379; Name=CX671379; organism=Citrus sinensis; type=EST; length=728bp
TGACTTTTTAATCACAATATCAAATGGAATTCCTTTCAATTCAGTCAAAA
AGACAACCTAAGAAAATAAACTGAAGAAAATTATCAAAAACAATTCTTCT
ACAAGACAGACATACTGAACGATGCAAAACTAACATGTAAACAAAACTTG
CAGCTTGATGAACCAATAGGAGATGACAAAACTCAACGCTTCTTGGAGAC
ACCAACGGTCTTTCCCCTGCGTCCAGTAGTCTTGGTGTGCTGTCCACGAA
CTCTAAGACCCCAGTAGTGTCGTAGACCACGGTGGTTTCTGATCTTCTTC
AAGCGCTCAAGATCATCCCTAAGCTTCATGTCCAATGCATTAGACACGAC
CTGGGAGTACCTCCCATCCTTGTAATCCTTTTGCCTGTTAAGAAACCAGT
CTGGGATCTTAAACTGGCGTGGATTTGCCACAACCACCATCAGTTGGTCA
AGCTCAGCGGCAGAGAGCTCACCAGCTCTTTTGTTCATGTCGACATCAGC
TTTCTTGCAGACAATATTGGCCAAACGGCGACCGATACCCTTAATGGATG
TGAGAGCAAACATGATCTTTTGTTTCCCATCAACATTCGTGTTCAGAACA
CGAAGAATGTGTTGAAAATCCTCGTTGGCTACCAGAGACATGGCTGGAGA
TGTTCGTTTCTCTTTTTTCCTTTATGGTTGACTTTTGTGCCTTCGCCTTC
TCCGGAGGTGAGTGTAAATGGAGGTATG
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