CX671379
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26 Identity = 52/128 (40.62%), Postives = 86/128 (67.19%), Query Frame = -1 Query: 240 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 623 E+F+H++R+ ++DG + + ALTSIKG+G+ L+ + A D+N+R G LS E+++L + NP ++ IP W +NR+ DY+ G ++ + L+M LR+DL R++K R+++G RH GL VRGQ Sbjct: 3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHELGLPVRGQ 130
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26 Identity = 53/128 (41.41%), Postives = 87/128 (67.97%), Query Frame = -1 Query: 240 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 623 +DF+H++R+ +VDG + I ALT IKG+G L+ +C+ D+D + G ++ ++ ++ ++ NP++F IP+W LNR++DY+ G ++ + LDM LRDDL R+KK R+++G RH GL VRGQ Sbjct: 3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTRSYKGRRHEAGLPVRGQ 130
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24 Identity = 56/145 (38.62%), Postives = 92/145 (63.45%), Query Frame = -1 Query: 186 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 620 DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ ++ ++ +P IP W +NR KDY+ G+ +++ LDM +R+D+ RL++IR +RG+RH GL VRGQ VSKK+ Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSKKK 147
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24 Identity = 54/127 (42.52%), Postives = 88/127 (69.29%), Query Frame = -1 Query: 240 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 620 +F+HI+RV ++DG +++ +ALT+IKGIG A +VC+ A +D +AG L+ ++ ++ ++A+P IP W +NR KDY+ GR +++ LDM +R+D+ RL++IR +RG+RH GL VRGQ Sbjct: 3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24 Identity = 53/127 (41.73%), Postives = 87/127 (68.50%), Query Frame = -1 Query: 240 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 620 DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ ++ ++ +P IP W +NR KDY+ GR +++ LDM +R+D+ RL++IR +RG+RH GL VRGQ Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24 Identity = 54/133 (40.60%), Postives = 89/133 (66.92%), Query Frame = -1 Query: 240 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA--NPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 632 +A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A +C++ +D K+ GELS E++++ + + + IP W NRQKDY+ G +V L+M ++ D++RLKKIR +RG+RH GL VRGQ Sbjct: 1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIRAYRGIRHELGLPVRGQ 133
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24 Identity = 53/132 (40.15%), Postives = 87/132 (65.91%), Query Frame = -1 Query: 240 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 635 +++ + +++I+R+L T++ G K+ + L +KGIG LA +C+ +D NKR G L+ AE++++ +ANP IP W LNR+KDY+ G+ +V L ++ D+ER K+IR+ RG+RH GL+VRGQ Sbjct: 1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRGIRHALGLKVRGQ 132
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24 Identity = 50/129 (38.76%), Postives = 86/129 (66.67%), Query Frame = -1 Query: 240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626 NE+FQ+I+R+ N +++G++ + AL +KGIG RL+ + KK D+D ++R GEL ++++L + IP W N ++D G+ +VSN LD+++ DD+ +KK+R+++G+RH GL+VRGQ Sbjct: 8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRHERGLKVRGQ 136
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23 Identity = 52/129 (40.31%), Postives = 84/129 (65.12%), Query Frame = -1 Query: 240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626 N +F++++RV T++DG +K++ AL I G+G +A + + A +D NK AG L+ E+ ++ V+A+P +F IP W NR+KDY G V+ + L + ++D+ RLK+IR +RG+RH GL RGQ Sbjct: 3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQ 131
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23 Identity = 53/127 (41.73%), Postives = 81/127 (63.78%), Query Frame = -1 Query: 240 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 620 + Q+I+R+ NTN+DG ++I FALT I+GIG R+A +CK+ +D+ KRAGE+ E+ ++ + +P IP+ ++N Q+D DG S ++ LD LR +ER KK + R R GL+VRGQ Sbjct: 9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQ 135 The following BLAST results are available for this feature:
BLAST of CX671379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671379 ID=CX671379; Name=CX671379; organism=Citrus sinensis; type=EST; length=728bpback to top |