CX671379
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23 Identity = 54/144 (37.50%), Postives = 88/144 (61.11%), Query Frame = -1 Query: 240 RKKEKRTSPAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 671 RK K PA ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD + G L ++D+L V+ N + +P W LNR++D G + L M +++D+ +KKIR+++G+RH G +VRGQ Sbjct: 51 RKGGKGKKPAAEEKPKDEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRGQ 193
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23 Identity = 52/145 (35.86%), Postives = 86/145 (59.31%), Query Frame = -1 Query: 186 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 620 ++++I+R+ T++DG K ++ L IKG+G LA +C++ +D R G L+ E+ ++ +++NP + IP W LNR+KDY G+ ++ L ++ D+ER KKI++ RG+RH GL+VRGQ V KKR Sbjct: 6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHALGLKVRGQRTRTTGRLGLTVGVRKKR 150
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23 Identity = 52/128 (40.62%), Postives = 85/128 (66.41%), Query Frame = -1 Query: 240 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 623 E+F+HI+RV ++DG +++ +ALT IKGIG A +V + A +D +AG L+ ++ ++ ++A+P IP W +NR KDY+ G+ +++ L M R+D+ RL++IR +RG+RH GL VRGQ Sbjct: 3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQ 130
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22 Identity = 49/144 (34.03%), Postives = 94/144 (65.28%), Query Frame = -1 Query: 240 RKKEKRTSPAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 671 + ++ PA N+DFQ+I+R+ N +++G++ I AL+ +KGIG RL + ++ ++ K+ GEL E+++L V N +++ +PDW LN +++ G+ +V+ LD+++++D+ +KKIR+++G+RH G +VRGQ Sbjct: 10 KSDKEAAKPAAKKDENKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22 Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = -1 Query: 240 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 620 + +HI+R+ NT++DGK+++ ALT IKG+GRRLA + KA VD G+L +++ L V+ + R IP W +NR+KD G V+ + LR+DL+ +KK R+++G+RH GLRVRGQ Sbjct: 11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRHELGLRVRGQ 136
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22 Identity = 50/149 (33.56%), Postives = 98/149 (65.77%), Query Frame = -1 Query: 240 KSQP*RKKEKRTSPAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 686 KSQP +K+ N+DFQ+I+R+ N +++G++ + AL+ +KGIG RL ++ ++ D+ ++K+ GEL +L++L V +++ +P+W LN +++ G+ +VS L++++++D+ +KKIR+++G+RH G +VRGQ Sbjct: 17 KSQPEKKE------------NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22 Identity = 51/129 (39.53%), Postives = 83/129 (64.34%), Query Frame = -1 Query: 240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626 ++ F++++R+ +VDG K+ +AL +KGIG A + +K +D N R GELS AE+ ++ V+++ +P W NR+KDY+ G +V++ L +R+D+ER KK R+ RG+RH GL+VRGQ Sbjct: 2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQ 130
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22 Identity = 49/129 (37.98%), Postives = 79/129 (61.24%), Query Frame = -1 Query: 240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626 NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD + G L E+ +L + +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH GL+VRGQ Sbjct: 17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21 Identity = 50/131 (38.17%), Postives = 86/131 (65.65%), Query Frame = -1 Query: 240 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 632 ++ + F++I+R+ +VDG K+ +AL IKGIG A I+ +K ++D +KR GE+S ++ ++ ++ N + P+W NRQKDY+ G +V++ L +R+D+ER ++ R+ RG+RH GL+VRGQ Sbjct: 1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLGLKVRGQ 131
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21 Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = -1 Query: 240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ +L + + +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH GL+VRGQ Sbjct: 17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144 The following BLAST results are available for this feature:
BLAST of CX671379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671379 ID=CX671379; Name=CX671379; organism=Citrus sinensis; type=EST; length=728bpback to top |