CX671379
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21 Identity = 48/128 (37.50%), Postives = 83/128 (64.84%), Query Frame = -1 Query: 240 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 623 + F++I+R+ +VDG K+ +AL +KGIG A + K +D ++R GELS ++ ++ + + + ++P+W NR+KDY+ G +V++ L +R+D+ER KKI++ RG+RH GL+VRGQ Sbjct: 5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQ 132
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21 Identity = 51/129 (39.53%), Postives = 79/129 (61.24%), Query Frame = -1 Query: 240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ +L + N +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH GL+VRGQ Sbjct: 17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21 Identity = 50/129 (38.76%), Postives = 78/129 (60.47%), Query Frame = -1 Query: 240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626 +ED Q+ +R+ T++DG + + ALT + GIGRR+A I+ +KA+VD G L ++D ++ V ++P+W N QKD+ G + + N L M R D+ R+KKI +RG+RH G +VRGQ Sbjct: 12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQ 139
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20 Identity = 48/131 (36.64%), Postives = 82/131 (62.60%), Query Frame = -1 Query: 240 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 632 +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++ +D N G LS ++ +L + + + ++P W LNRQ D G ++ + + L++DL LKK R +RGLRH GL+VRGQ Sbjct: 1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTI-DKFEEQLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRHERGLKVRGQ 130
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19 Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = -1 Query: 240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626 +++ + +RV NT++DG + ++ +LT IKG+GR A + + A V+ N G+L A +D++ VV+N +IP W NR KD G ++ + M + DD+ LKKIR +RG+RH G +VRGQ Sbjct: 5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETGQKVRGQ 132
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19 Identity = 52/150 (34.67%), Postives = 81/150 (54.00%), Query Frame = -1 Query: 186 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 635 + F++I+R+ ++DG K+ + L SIKGIG A V + +D K+ G L+ E+ +L V+ + Q +P W NR+KDY+ G+ ++ + L R D+ER KI + RG+RH +GL+VRGQ V KKR Sbjct: 1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 150
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19 Identity = 49/126 (38.89%), Postives = 77/126 (61.11%), Query Frame = -1 Query: 240 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 617 F+HI+R+ +T++DG + +MFALT IKGIG R A + + VD + GEL ++++ V + +P W LNR+KD G+ ++S +D D+ERL K++ +RG+RH G +VRGQ Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQ 127
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18 Identity = 48/128 (37.50%), Postives = 75/128 (58.59%), Query Frame = -1 Query: 240 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 623 ED ++ +R+ T++DG + + ALT + GIG R A I+ +KADVD G+L +++++ V N +P+W N QKDY G + N L + R D+ R+K I ++RG+RH G +VRGQ Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQ 144
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18 Identity = 46/127 (36.22%), Postives = 80/127 (62.99%), Query Frame = -1 Query: 240 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 620 +F++I+RV ++ G + +++AL IKGIG A V KK +D + G LS E+++L + + +P W LNR+KD G ++++ L + +R+D+E +KKI++++G+RH GL+VRGQ Sbjct: 4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRHMLGLKVRGQ 130
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17 Identity = 43/129 (33.33%), Postives = 83/129 (64.34%), Query Frame = -1 Query: 240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626 +++ + I+R+ +T++DG +++ ++LT I+GIG A +C+K +D + G LS ++++L V N + P WFLNR+KD + G+ ++ L + + D++ +KK+++ +G+RH GL+VRGQ Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129 The following BLAST results are available for this feature:
BLAST of CX671379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671379 ID=CX671379; Name=CX671379; organism=Citrus sinensis; type=EST; length=728bpback to top |